From 7a96d0b1b15ab28fe3a618db35364891ab5d0328 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Tue, 26 May 2020 17:30:30 -0400
Subject: Can have list of sequence labels to exclude from combined fasta

refs #68

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 workflows/pangenome-generate/pangenome-generate.cwl | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'workflows/pangenome-generate/pangenome-generate.cwl')

diff --git a/workflows/pangenome-generate/pangenome-generate.cwl b/workflows/pangenome-generate/pangenome-generate.cwl
index ad8b27f..9118cf8 100644
--- a/workflows/pangenome-generate/pangenome-generate.cwl
+++ b/workflows/pangenome-generate/pangenome-generate.cwl
@@ -9,6 +9,7 @@ inputs:
   metadata: File[]
   metadataSchema: File
   subjects: string[]
+  exclude: File?
   bin_widths:
     type: int[]
     default: [ 1, 4, 16, 64, 256, 1000, 4000, 16000]
@@ -47,6 +48,7 @@ steps:
     in:
       readsFA: inputReads
       subjects: subjects
+      exclude: exclude
     out: [relabeledSeqs, originalLabels]
     run: relabel-seqs.cwl
   dedup:
-- 
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