From 1e9a735e84a8e89099b1de2ec66c56669caf6cc8 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Sat, 21 Nov 2020 23:06:05 +0100
Subject: added abPOA workflow; typos

---
 .../odgi-build-from-spoa-gfa.cwl                   | 29 ----------------------
 1 file changed, 29 deletions(-)
 delete mode 100644 workflows/pangenome-generate/odgi-build-from-spoa-gfa.cwl

(limited to 'workflows/pangenome-generate/odgi-build-from-spoa-gfa.cwl')

diff --git a/workflows/pangenome-generate/odgi-build-from-spoa-gfa.cwl b/workflows/pangenome-generate/odgi-build-from-spoa-gfa.cwl
deleted file mode 100644
index eee4031..0000000
--- a/workflows/pangenome-generate/odgi-build-from-spoa-gfa.cwl
+++ /dev/null
@@ -1,29 +0,0 @@
-cwlVersion: v1.1
-class: CommandLineTool
-inputs:
-  inputGFA: File
-outputs:
-  odgiGraph:
-    type: File
-    outputBinding:
-      glob: $(inputs.inputGFA.nameroot).unchop.sorted.odgi
-requirements:
-  InlineJavascriptRequirement: {}
-hints:
-  DockerRequirement:
-    dockerPull: "odgi-bash-binutils:latest"
-  ResourceRequirement:
-    coresMin: 4
-    ramMin: $(15 * 1024)
-    outdirMin: $(Math.ceil((inputs.inputGFA.size/(1024*1024*1024)+1) * 2))
-  InitialWorkDirRequirement:
-    # Will fail if input file is not writable (odgi bug)
-    listing:
-      - entry: $(inputs.inputGFA)
-        writable: true
-arguments:
-  - "sh"
-  - "-c"
-  - >-
-    odgi build -g '$(inputs.inputGFA.path)' -o - | odgi unchop -i - -o - |
-    odgi sort -i - -p s -o $(inputs.inputGFA.nameroot).unchop.sorted.odgi
-- 
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