From 6599feb6a6f8b488bd2d12fcf532c3b8a917a17f Mon Sep 17 00:00:00 2001
From: Michael R. Crusoe
Date: Tue, 5 May 2020 13:11:02 +0200
Subject: move some tools into the shared repo

---
 workflows/pangenome-generate/minimap2.cwl | 23 -----------------------
 1 file changed, 23 deletions(-)
 delete mode 100644 workflows/pangenome-generate/minimap2.cwl

(limited to 'workflows/pangenome-generate/minimap2.cwl')

diff --git a/workflows/pangenome-generate/minimap2.cwl b/workflows/pangenome-generate/minimap2.cwl
deleted file mode 100644
index bf8eb4c..0000000
--- a/workflows/pangenome-generate/minimap2.cwl
+++ /dev/null
@@ -1,23 +0,0 @@
-cwlVersion: v1.1
-class: CommandLineTool
-inputs:
-  readsFA: File
-outputs:
-  readsPAF: stdout
-requirements:
-  InlineJavascriptRequirement: {}
-hints:
-  DockerRequirement:
-    dockerPull: "quay.io/biocontainers/minimap2:2.17--h8b12597_1"
-  ResourceRequirement:
-    coresMin: 8
-    coresMax: 32
-    ramMin: $(15 * 1024)
-    outdirMin: $(Math.ceil(inputs.readsFA.size/(1024*1024*1024) + 20))
-stdout: $(inputs.readsFA.nameroot).paf
-baseCommand: minimap2
-arguments: [-cx, asm20,
-            -w, "1",
-            -t, $(runtime.cores),
-            $(inputs.readsFA),
-            $(inputs.readsFA)]
-- 
cgit v1.2.3