From 9ddcfeacb3191638f42b08af999889d867f0f81c Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Mon, 20 Apr 2020 14:57:25 -0400
Subject: Better handling of duplicate sequences

Also save original fasta label in metadata
---
 workflows/pangenome-generate/merge-metadata.cwl | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'workflows/pangenome-generate/merge-metadata.cwl')

diff --git a/workflows/pangenome-generate/merge-metadata.cwl b/workflows/pangenome-generate/merge-metadata.cwl
index 9164c09..fcefe32 100644
--- a/workflows/pangenome-generate/merge-metadata.cwl
+++ b/workflows/pangenome-generate/merge-metadata.cwl
@@ -7,6 +7,8 @@ inputs:
   metadata: File[]
   metadataSchema: File
   subjects: string[]
+  dups: File?
+  originalLabels: File
 outputs:
   merged: stdout
 stdout: mergedmetadata.ttl
-- 
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