From b3d2ccf951903ac0b7d717357fb1cccca26fbd15 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Wed, 19 Aug 2020 15:19:07 -0400
Subject: Consolidate steps to scale graph generation workflow

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 workflows/pangenome-generate/dups2metadata.cwl | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 workflows/pangenome-generate/dups2metadata.cwl

(limited to 'workflows/pangenome-generate/dups2metadata.cwl')

diff --git a/workflows/pangenome-generate/dups2metadata.cwl b/workflows/pangenome-generate/dups2metadata.cwl
new file mode 100644
index 0000000..cf54675
--- /dev/null
+++ b/workflows/pangenome-generate/dups2metadata.cwl
@@ -0,0 +1,19 @@
+cwlVersion: v1.1
+class: CommandLineTool
+baseCommand: python
+inputs:
+  script:
+    type: File
+    default:
+      class: File
+      location: dups2metadata.py
+    inputBinding: {position: 1}
+  metadata:
+    type: File
+    inputBinding: {position: 2}
+  dups:
+    type: File?
+    inputBinding: {position: 3}
+stdout: mergedmetadata.ttl
+outputs:
+  merged: stdout
-- 
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