From 7eea5e99222166731c7e55a95f6c00928289b4b9 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sat, 7 Nov 2020 08:48:38 +0000
Subject: Added failing unit test: No matching triples found for predicate
 cc:License

---
 test/test_shex.py | 35 +++++++++++++++++++++++++++++++++++
 1 file changed, 35 insertions(+)
 create mode 100644 test/test_shex.py

(limited to 'test/test_shex.py')

diff --git a/test/test_shex.py b/test/test_shex.py
new file mode 100644
index 0000000..ead2396
--- /dev/null
+++ b/test/test_shex.py
@@ -0,0 +1,35 @@
+import schema_salad.schema
+import schema_salad.ref_resolver
+import schema_salad.jsonld_context
+import pkg_resources
+import logging
+import traceback
+# from rdflib import Graph, Namespace
+from pyshex.evaluate import evaluate
+import unittest
+
+class TestStringMethods(unittest.TestCase):
+
+    def test_schema(self):
+        with open("bh20sequploader/bh20seq-schema.yml") as schema_resource:
+            metadata_schema = schema_salad.schema.load_schema("https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-schema.yml")
+            (document_loader,
+             avsc_names,
+             schema_metadata,
+             metaschema_loader) = metadata_schema
+            print(metadata_schema)
+            assert(isinstance(avsc_names, schema_salad.avro.schema.Names))
+            metadatafile = "test/data/input/TN_UT2.yaml"
+            doc, metadata = schema_salad.schema.load_and_validate(document_loader, avsc_names, metadatafile, True)
+            print(doc)
+            g = schema_salad.jsonld_context.makerdf("workflow", doc, document_loader.ctx)
+            shex = pkg_resources.resource_stream(__name__, "../bh20sequploader/bh20seq-shex.rdf").read().decode("utf-8")
+            rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape")
+
+            g.serialize(format="ntriples")
+
+            if not rslt:
+                raise Exception(reason)
+
+if __name__ == '__main__':
+    unittest.main()
-- 
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