From 518090d92f0d91c08e86ac8b96ea0274376e744b Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Tue, 28 Apr 2020 15:02:30 -0400 Subject: Call clustalw to compare sequence to reference Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- setup.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'setup.py') diff --git a/setup.py b/setup.py index 4ab6329..dc2bdce 100644 --- a/setup.py +++ b/setup.py @@ -34,7 +34,8 @@ setup( package_data={"bh20sequploader": ["bh20seq-schema.yml", "bh20seq-options.yml", "bh20seq-shex.rdf", - "validation/formats"], + "validation/formats", + "SARS-CoV-2-reference.fasta",], }, install_requires=install_requires, extras_require={ -- cgit v1.2.3 From 3475c3e30197a11ada10d1b0a4bafb026f2fb580 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Wed, 29 Apr 2020 14:55:51 -0400 Subject: Fix description content type for PyPi Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- README.md | 8 ++++++++ setup.py | 2 +- 2 files changed, 9 insertions(+), 1 deletion(-) (limited to 'setup.py') diff --git a/README.md b/README.md index 8b78ebd..f41b79b 100644 --- a/README.md +++ b/README.md @@ -35,6 +35,14 @@ Note that you will need to repeat the `. venv/bin/activate` step from this direc 3. **Install the tool.** Once in your virtualenv, install this project: +Install from PyPi: + +```sh +pip3 bh20-seq-uploader +``` + +Install from git: + ```sh pip3 install git+https://github.com/arvados/bh20-seq-resource.git@master ``` diff --git a/setup.py b/setup.py index dc2bdce..473d0ca 100644 --- a/setup.py +++ b/setup.py @@ -26,7 +26,7 @@ setup( version="1.0", description="Biohackathon sequence uploader", long_description=open(README).read(), - long_description_content_type="text/x-rst", + long_description_content_type="text/markdown", author="Peter Amstutz", author_email="peter.amstutz@curii.com", license="Apache 2.0", -- cgit v1.2.3 From 3b69ffa7d7f3b24a393bbf11b9de79a9eb96eac6 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Thu, 30 Apr 2020 12:07:03 -0400 Subject: Add py-dateutil to dependencies. Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- setup.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'setup.py') diff --git a/setup.py b/setup.py index 473d0ca..412c103 100644 --- a/setup.py +++ b/setup.py @@ -15,7 +15,8 @@ try: except ImportError: tagger = egg_info_cmd.egg_info -install_requires = ["arvados-python-client", "schema-salad", "python-magic", "pyshex"] +install_requires = ["arvados-python-client", "schema-salad", + "python-magic", "pyshex", "py-dateutil"] web_requires = ["flask", "pyyaml"] needs_pytest = {"pytest", "test", "ptr"}.intersection(sys.argv) -- cgit v1.2.3