From 6165495618b9c2ad3ad7b8bd95ed807d022ebf1c Mon Sep 17 00:00:00 2001
From: Andrea Guarracino
Date: Thu, 30 Apr 2020 18:27:07 +0200
Subject: fixed UO_0000036 for year

---
 scripts/from_genbank_to_fasta_and_yaml.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'scripts')

diff --git a/scripts/from_genbank_to_fasta_and_yaml.py b/scripts/from_genbank_to_fasta_and_yaml.py
index 900f087..6f046ea 100755
--- a/scripts/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/from_genbank_to_fasta_and_yaml.py
@@ -200,7 +200,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
 
                         if 'age' in GBQualifier_value_text:
                             info_for_yaml_dict['host']['host_age'] = int(GBQualifier_value_text_list[2].split('age ')[1])
-                            info_for_yaml_dict['host']['host_age_unit'] = 'year'
+                            info_for_yaml_dict['host']['host_age_unit'] = 'http://purl.obolibrary.org/obo/UO_0000036'
                 elif GBQualifier_name_text == 'collected_by':
                     if any([x in GBQualifier_value_text.lower() for x in ['institute', 'hospital', 'city', 'center']]):
                         info_for_yaml_dict['sample']['collecting_institution'] = GBQualifier_value_text
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