From c754aab95f47317228a07ccbe3818780aa22a52a Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Fri, 4 Sep 2020 12:34:54 +0200
Subject: fixed bugs in in index management and type conversion

---
 scripts/create_sra_metadata/create_sra_metadata.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'scripts')

diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index 8866d01..b872896 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -198,7 +198,7 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
                         missing_value_list.append('\t'.join([accession, 'host_sex', VALUE_text]))
             elif TAG_text in ['host_age', 'host age']:
                 if is_integer(VALUE_text):
-                    info_for_yaml_dict['host']['host_age'] = VALUE_text
+                    info_for_yaml_dict['host']['host_age'] = int(VALUE_text)
                     info_for_yaml_dict['host']['host_age_unit'] = 'http://purl.obolibrary.org/obo/UO_0000036'
             elif TAG_text == 'collected_by':
                 if VALUE_text.lower() not in ['not available', 'missing']:
-- 
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