From bb90f06da570624952d4b7001ee37fc7018e3a7d Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Sun, 12 Jul 2020 15:58:29 +0200
Subject: added a suffix to distinguish which script created the error/warning
 files

---
 scripts/create_sra_metadata/create_sra_metadata.py              | 4 ++--
 scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

(limited to 'scripts')

diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index a31bd36..352a30e 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -251,13 +251,13 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
         json.dump(info_for_yaml_dict, fw, indent=2)
 
 if len(missing_value_list) > 0:
-    path_missing_terms_tsv = 'missing_terms.tsv'
+    path_missing_terms_tsv = 'missing_terms.sra.tsv'
     print('Written missing terms in {}'.format(path_missing_terms_tsv))
     with open(path_missing_terms_tsv, 'w') as fw:
         fw.write('\n'.join(missing_value_list))
 
 if len(not_created_accession_list) > 0:
-    path_not_created_accession_tsv = 'not_created_accession.tsv'
+    path_not_created_accession_tsv = 'not_created_accession.sra.tsv'
     print('Written not created accession in {}'.format(path_not_created_accession_tsv))
     with open(path_not_created_accession_tsv, 'w') as fw:
         fw.write('\n'.join(['\t'.join(x) for x in not_created_accession_list]))
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index d5b0ffd..dbebfbb 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -391,19 +391,19 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
             continue
 
 if len(missing_value_list) > 0:
-    path_missing_terms_tsv = 'missing_terms.tsv'
+    path_missing_terms_tsv = 'missing_terms.genbank.tsv'
     print('Written missing terms in {}'.format(path_missing_terms_tsv))
     with open(path_missing_terms_tsv, 'w') as fw:
         fw.write('\n'.join(missing_value_list))
 
 if len(accession_with_errors_list) > 0:
-    path_accession_with_errors_tsv = 'accession_with_errors.tsv'
+    path_accession_with_errors_tsv = 'accession_with_errors.genbank.tsv'
     print('Written the accession with errors in {}'.format(path_accession_with_errors_tsv))
     with open(path_accession_with_errors_tsv, 'w') as fw:
         fw.write('\n'.join(accession_with_errors_list))
 
 if len(not_created_accession_list) > 0:
-    path_not_created_accession_tsv = 'not_created_accession.tsv'
+    path_not_created_accession_tsv = 'not_created_accession.genbank.tsv'
     print('Written not created accession in {}'.format(path_not_created_accession_tsv))
     with open(path_not_created_accession_tsv, 'w') as fw:
         fw.write('\n'.join(['\t'.join(x) for x in not_created_accession_list]))
-- 
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