From 6207501c9b504936a61f232d33344e04350b0aed Mon Sep 17 00:00:00 2001
From: Andrea Guarracino
Date: Thu, 9 Jul 2020 00:39:48 +0200
Subject: fixed bug that lead to invalid sample_sequencing_technology values
---
scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
(limited to 'scripts')
diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index cb94787..39e401a 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -219,11 +219,10 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
seq_tec = seq_tec.strip()
if seq_tec in term_to_uri_dict:
seq_tec = term_to_uri_dict[seq_tec]
+ new_seq_tec_list.append(seq_tec)
else:
missing_value_list.append('\t'.join([accession_version, 'sample_sequencing_technology', seq_tec]))
- new_seq_tec_list.append(seq_tec)
-
if len(new_seq_tec_list) > 0:
info_for_yaml_dict['technology']['sample_sequencing_technology'] = [x for x in new_seq_tec_list]
else:
--
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