From 27fd3fd297edbed5e5d29669eb0ad127aec162e8 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Mon, 6 Jul 2020 11:26:44 +0200
Subject: added seq technology in its additional information field if the term
 is missing in the dicts

---
 scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 1 +
 1 file changed, 1 insertion(+)

(limited to 'scripts/download_genbank_data')

diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 4bb4964..7edb1dc 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -218,6 +218,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
                                 if seq_tec in term_to_uri_dict:
                                     seq_tec = term_to_uri_dict[seq_tec]
                                 else:
+                                    info_for_yaml_dict['technology']['additional_technology_information'] = seq_tec
                                     missing_value_list.append('\t'.join([accession_version, 'sample_sequencing_technology', seq_tec]))
 
                                 new_seq_tec_list.append(seq_tec)
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