From dbd32a3042099d52d30028364ffdadcd0f60ede2 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Thu, 12 Nov 2020 18:50:13 +0100
Subject: managed the assembly_method in the scripts, doc, and the example
 templates

---
 scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py')

diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 87b348b..9a46474 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -179,6 +179,8 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml)
                         else:
                             info_for_yaml_dict['submitter']['additional_submitter_information'] = GBReference_journal.text
 
+            # This script download and prepare data and metadata for assemblies samples
+            info_for_yaml_dict['technology']['assembly_method'] = 'http://purl.obolibrary.org/obo/GENEPIO_0001628'
 
             GBSeq_comment = GBSeq.find('GBSeq_comment')
             if GBSeq_comment is not None and 'Assembly-Data' in GBSeq_comment.text:
-- 
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