From ba8c23625dea3d869eab821007e8f5db2eaf9dfe Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Sat, 14 Nov 2020 23:30:53 +0100 Subject: added a check on host_age --- scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py') diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py index 442a9a5..f9cc3fa 100755 --- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py +++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py @@ -311,7 +311,7 @@ for path_metadata_xxx_xml in [os.path.join(dir_metadata, name_metadata_xxx_xml) elif len(GBQualifier_value_text_list) > 2 and is_integer(GBQualifier_value_text_list[2].split(' ')[-1]): host_age = int(GBQualifier_value_text_list[2].split(' ')[-1]) - if host_age > -1: + if host_age > 0 and host_age < 110: info_for_yaml_dict['host']['host_age'] = host_age info_for_yaml_dict['host']['host_age_unit'] = 'http://purl.obolibrary.org/obo/UO_0000036' elif len(GBQualifier_value_text_list) > 2: -- cgit v1.2.3