From 327b6db4e7c9ceda190617f2a793e6a646bb30cc Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Fri, 4 Sep 2020 11:13:25 +0200
Subject: added in the sra script an option to include only a subset of ids

---
 scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

(limited to 'scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py')

diff --git a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
index 7251819..52aee4e 100755
--- a/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
+++ b/scripts/download_genbank_data/from_genbank_to_fasta_and_yaml.py
@@ -58,7 +58,8 @@ if args.ids_to_ignore:
 
     with open(args.ids_to_ignore) as f:
         accession_to_ignore_set.update(set([x.split('.')[0] for x in f.read().strip('\n').split('\n')]))
-        print('There are {} accessions to ignore.'.format(len(accession_to_ignore_set)))
+
+    print('There are {} accessions to ignore.'.format(len(accession_to_ignore_set)))
 
 
 accession_already_downloaded_set = set()
-- 
cgit v1.2.3