From dbd32a3042099d52d30028364ffdadcd0f60ede2 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Thu, 12 Nov 2020 18:50:13 +0100
Subject: managed the assembly_method in the scripts, doc, and the example
 templates

---
 scripts/create_sra_metadata/create_sra_metadata.py | 2 ++
 1 file changed, 2 insertions(+)

(limited to 'scripts/create_sra_metadata')

diff --git a/scripts/create_sra_metadata/create_sra_metadata.py b/scripts/create_sra_metadata/create_sra_metadata.py
index 2aac0e5..554aea3 100644
--- a/scripts/create_sra_metadata/create_sra_metadata.py
+++ b/scripts/create_sra_metadata/create_sra_metadata.py
@@ -227,6 +227,8 @@ for i, EXPERIMENT_PACKAGE in enumerate(EXPERIMENT_PACKAGE_SET):
     taxon_id = SAMPLE.find('SAMPLE_NAME').find('TAXON_ID').text
     info_for_yaml_dict['virus']['virus_species'] = "http://purl.obolibrary.org/obo/NCBITaxon_"+taxon_id
 
+    # This script download and prepare data and metadata for samples that will be mapepd againg a referenceT
+    info_for_yaml_dict['technology']['assembly_method'] = 'http://purl.obolibrary.org/obo/GENEPIO_0002028'
 
     EXPERIMENT = EXPERIMENT_PACKAGE.find('EXPERIMENT')
     INSTRUMENT_MODEL = [x.text for x in EXPERIMENT.find('PLATFORM').iter('INSTRUMENT_MODEL')][0]
-- 
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