From 5ce0a8641f0dd7f3d81f631d67908ddcfd8de1fb Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 8 Apr 2020 11:53:21 -0500
Subject: Paper

---
 paper/paper.bib |   0
 paper/paper.md  | 109 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 109 insertions(+)
 create mode 100644 paper/paper.bib
 create mode 100644 paper/paper.md

(limited to 'paper')

diff --git a/paper/paper.bib b/paper/paper.bib
new file mode 100644
index 0000000..e69de29
diff --git a/paper/paper.md b/paper/paper.md
new file mode 100644
index 0000000..8942d01
--- /dev/null
+++ b/paper/paper.md
@@ -0,0 +1,109 @@
+---
+title: 'Logic Programming Working Group'
+tags:
+  - logic programming
+authors:
+  - name: Pjotr Prins
+    orcid: 0000-0002-8021-9162
+    affiliation: 1
+  - name: Peter Amstutz
+    orcid: 0000
+    affiliation: 2
+  - name: Tazro Ohta
+    orcid: 0000
+    affiliation: 3
+  - name: Thomas Liener
+    orcid: 0000
+    affiliation: 4
+  - name: Erik Garrison
+    orcid: 0000
+    affiliation: 5
+  - name: Michael Crusoe
+    orcid: 0000
+    affiliation: 6
+  - name: Rutger Vos
+    orcid: 0000
+    affiliation: 7
+  - Michael Heuer
+    orcid: 0000
+    affiliation: 8
+
+affiliations:
+  - name: Department of Genetics, Genomics and Informatics, The University of Tennessee Health Science Center, Memphis, TN, USA.
+    index: 1
+  - name: Curii, Boston, USA
+    index: 2
+date: 11 April 2020
+bibliography: paper.bib
+---
+
+<!--
+
+The paper.md, bibtex and figure file can be found in this repo:
+
+  https://github.com/arvados/bh20-seq-resource
+
+To modify, please clone the repo. You can generate PDF of the paper by
+pasting above link (or yours) with
+
+  https://github.com/biohackrxiv/bhxiv-gen-pdf
+
+-->
+
+# Introduction
+
+As part of the one week COVID-19 Biohackathion 2020, we formed a
+working group on creating a public sequence resource for Corona virus.
+
+
+<!--
+
+    RESULTS!
+
+    For each section below
+
+    State the problem you worked on
+    Give the state-of-the art/plan
+    Describe what you have done/results starting with The working group created...
+    Write a conclusion
+    Write up any future work
+
+-->
+
+## Cloud computing backend
+
+Peter, Pjotr, MichaelC
+
+## A command-line sequence uploader
+
+Peter, Pjotr
+
+## Metadata uploader
+
+With Thomas
+
+## FASTA to GFA workflow
+
+Michael Heuer
+
+## BAM to GFA workflow
+
+Tazro & Erik
+
+## Phylogeny app
+
+With Rutger
+
+## RDF app
+
+Jerven?
+
+## EBI app
+
+?
+
+# Discussion
+
+Future work...
+
+# References
-- 
cgit v1.2.3


From 146cf2f5d1be9a5dd9d6cd65ce9c760853d014f8 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 8 Apr 2020 11:56:46 -0500
Subject: title

---
 paper/paper.md | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

(limited to 'paper')

diff --git a/paper/paper.md b/paper/paper.md
index 8942d01..caa9903 100644
--- a/paper/paper.md
+++ b/paper/paper.md
@@ -1,7 +1,8 @@
 ---
-title: 'Logic Programming Working Group'
+title: 'Public Sequence Resource for COVID-19'
 tags:
-  - logic programming
+  - Sequencing
+  - COVID
 authors:
   - name: Pjotr Prins
     orcid: 0000-0002-8021-9162
-- 
cgit v1.2.3