From 5ce0a8641f0dd7f3d81f631d67908ddcfd8de1fb Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 8 Apr 2020 11:53:21 -0500 Subject: Paper --- paper/paper.bib | 0 paper/paper.md | 109 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 109 insertions(+) create mode 100644 paper/paper.bib create mode 100644 paper/paper.md (limited to 'paper') diff --git a/paper/paper.bib b/paper/paper.bib new file mode 100644 index 0000000..e69de29 diff --git a/paper/paper.md b/paper/paper.md new file mode 100644 index 0000000..8942d01 --- /dev/null +++ b/paper/paper.md @@ -0,0 +1,109 @@ +--- +title: 'Logic Programming Working Group' +tags: + - logic programming +authors: + - name: Pjotr Prins + orcid: 0000-0002-8021-9162 + affiliation: 1 + - name: Peter Amstutz + orcid: 0000 + affiliation: 2 + - name: Tazro Ohta + orcid: 0000 + affiliation: 3 + - name: Thomas Liener + orcid: 0000 + affiliation: 4 + - name: Erik Garrison + orcid: 0000 + affiliation: 5 + - name: Michael Crusoe + orcid: 0000 + affiliation: 6 + - name: Rutger Vos + orcid: 0000 + affiliation: 7 + - Michael Heuer + orcid: 0000 + affiliation: 8 + +affiliations: + - name: Department of Genetics, Genomics and Informatics, The University of Tennessee Health Science Center, Memphis, TN, USA. + index: 1 + - name: Curii, Boston, USA + index: 2 +date: 11 April 2020 +bibliography: paper.bib +--- + + + +# Introduction + +As part of the one week COVID-19 Biohackathion 2020, we formed a +working group on creating a public sequence resource for Corona virus. + + + + +## Cloud computing backend + +Peter, Pjotr, MichaelC + +## A command-line sequence uploader + +Peter, Pjotr + +## Metadata uploader + +With Thomas + +## FASTA to GFA workflow + +Michael Heuer + +## BAM to GFA workflow + +Tazro & Erik + +## Phylogeny app + +With Rutger + +## RDF app + +Jerven? + +## EBI app + +? + +# Discussion + +Future work... + +# References -- cgit v1.2.3 From 146cf2f5d1be9a5dd9d6cd65ce9c760853d014f8 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 8 Apr 2020 11:56:46 -0500 Subject: title --- paper/paper.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) (limited to 'paper') diff --git a/paper/paper.md b/paper/paper.md index 8942d01..caa9903 100644 --- a/paper/paper.md +++ b/paper/paper.md @@ -1,7 +1,8 @@ --- -title: 'Logic Programming Working Group' +title: 'Public Sequence Resource for COVID-19' tags: - - logic programming + - Sequencing + - COVID authors: - name: Pjotr Prins orcid: 0000-0002-8021-9162 -- cgit v1.2.3