From b106dc843cdc60902b0c6d423291584086fd2868 Mon Sep 17 00:00:00 2001 From: lltommy Date: Tue, 14 Apr 2020 22:56:33 +0200 Subject: Updated yaml schema and examples - plus ShEX shape to go along with it. Still work in progress but getting better and better I guess --- example/metadata.yaml | 9 ++++----- example/minimal_example.yaml | 3 +++ 2 files changed, 7 insertions(+), 5 deletions(-) (limited to 'example') diff --git a/example/metadata.yaml b/example/metadata.yaml index 15e4e44..5d9cffc 100644 --- a/example/metadata.yaml +++ b/example/metadata.yaml @@ -3,7 +3,6 @@ id: placeholder host: host_id: XX1 host_species: http://purl.obolibrary.org/obo/NCBITaxon_9606 - host_common_name: string host_sex: http://purl.obolibrary.org/obo/NCIT_C27993 host_age: 20 host_age_unit: http://purl.obolibrary.org/obo/UO_0000036 @@ -16,8 +15,8 @@ sample: collector_name: XXX collecting_institution: XXX specimen_source: XXX - collection_date: XXX - collection_location: http://purl.obolibrary.org/obo/NCIT_C16428 + collection_date: 2020-01 + collection_location: http://purl.obolibrary.org/obo/GAZ_00002459 sample_storage_conditions: XXX additional_collection_information: XXX @@ -28,7 +27,7 @@ virus: technology: sample_sequencing_technology: XX sequence_assembly_method: XX - sequencing_coverage: 70x + sequencing_coverage: 70 submitter: submitter_name: tester @@ -38,4 +37,4 @@ submitter: provider_sample_id: string submitter_sample_id: string authors: testAuthor - submitter_orchid: X12 + submitter_orchid: https://orcid.org/0000-0002-1825-0097 diff --git a/example/minimal_example.yaml b/example/minimal_example.yaml index 43adfa8..0080c6d 100644 --- a/example/minimal_example.yaml +++ b/example/minimal_example.yaml @@ -10,6 +10,9 @@ sample: collector_name: XXX collecting_institution: XXX +virus: + virus_species: http://purl.obolibrary.org/obo/NCBITaxon_2697049 + technology: sample_sequencing_technology: XX -- cgit v1.2.3