From 2e96d0d87abd6357868114b0b59ee66b08985235 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Tue, 21 Jul 2020 07:52:13 +0100 Subject: Documenting exports and REST API --- doc/web/export.html | 307 ++++++++++++++++++++++++++++++++++++++++++++++++++++ doc/web/export.org | 32 ++++++ 2 files changed, 339 insertions(+) create mode 100644 doc/web/export.html create mode 100644 doc/web/export.org (limited to 'doc') diff --git a/doc/web/export.html b/doc/web/export.html new file mode 100644 index 0000000..cc92d4f --- /dev/null +++ b/doc/web/export.html @@ -0,0 +1,307 @@ + + + + + + + +About/FAQ + + + + + + +
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About/FAQ

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Table of Contents

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1 Export data

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+Apart from straight file downloads COVID-19 PubSeq allows for +exporting forms and data for other services. +

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2 SPARQL API

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+First of all, PubSeq exports a SPARQL endpoint here that allows you do +do any query on the data. See this document for examples. +

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3 REST API

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+In addition to above flexible SPARQL endpoint - which is essentially +is a query REST API - PubSeq exports its own +REST API. +

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4 Export EBI/ENA Forms

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+Uploading data to EBI/ENA with PubSeq is described here. +

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+To export, +first search for an uploaded entry through its identifier: +

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Created by Pjotr Prins (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!
Modified 2020-07-21 Tue 01:51. +
+ + diff --git a/doc/web/export.org b/doc/web/export.org new file mode 100644 index 0000000..aa7d680 --- /dev/null +++ b/doc/web/export.org @@ -0,0 +1,32 @@ +#+TITLE: About/FAQ +#+AUTHOR: Pjotr Prins + +* Table of Contents :TOC:noexport: + - [[#export-data][Export data]] + - [[#sparql-api][SPARQL API]] + - [[#rest-api][REST API]] + - [[#export-ebiena-forms][Export EBI/ENA Forms]] + +* Export data + +Apart from straight file [[http://covid19.genenetwork.org/download][downloads]] COVID-19 PubSeq allows for +exporting forms and data for other services. + +* SPARQL API + + +First of all, PubSeq exports a SPARQL endpoint [[http://sparql.genenetwork.org/sparql/][here]] that allows you do +do any query on the data. See this [[http://covid19.genenetwork.org/blog?id=using-covid-19-pubseq-part1][document]] for examples. + +* REST API + +In addition to above flexible SPARQL endpoint - which is essentially +is a query REST API - PubSeq exports its own +[[http://covid19.genenetwork.org/apidoc][REST API]]. + +* Export EBI/ENA Forms + +Uploading data to EBI/ENA with PubSeq is described [[http://covid19.genenetwork.org/blog?id=using-covid-19-pubseq-part6][here]]. + +To export, +first search for an uploaded entry through its identifier: -- cgit v1.2.3