From 2d20bf90497588a297ca98a78ee0fbbcadf95569 Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Mon, 27 Jul 2020 17:34:03 +0200
Subject: added in the FAQ three questions from the BCC 2020 attendees

---
 doc/web/about.org | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)

(limited to 'doc/web')

diff --git a/doc/web/about.org b/doc/web/about.org
index 8a954bb..29a80bf 100644
--- a/doc/web/about.org
+++ b/doc/web/about.org
@@ -17,7 +17,10 @@
  - [[#how-do-i-change-the-work-flows][How do I change the work flows?]]
  - [[#how-do-i-change-the-source-code][How do I change the source code?]]
  - [[#should-i-choose-cc-by-or-cc0][Should I choose CC-BY or CC0?]]
+ - [[#are-there-also-variant-in-the-RDF-databases]][Are there also variant in the RDF databases?]
  - [[#how-do-i-deal-with-private-data-and-privacy][How do I deal with private data and privacy?]]
+ - [[#do-you-have-any-checks-or-concerns-if-human-sequence-accidentally-submitted-to-your-service-as-part-of-a-fastq][Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq?]
+ - [[#does-PubSeq-support-only-SARS-CoV-2=data]][Does PubSeq support only SARS-CoV-2 data?]
  - [[#how-do-i-communicate-with-you][How do I communicate with you?]]
  - [[#who-are-the-sponsors][Who are the sponsors?]]
 
@@ -173,6 +176,12 @@ because we know people like the attribution clause.
 
 In all honesty: we prefer both data and software to be free.
 
+* Are there also variant in the RDF databases? *
+
+We do output a RDF file with the pangenome built in, and you can parse it because it has variants implicitly.
+
+We are also writing tools to generate VCF files directly from the pangenome.
+
 * How do I deal with private data and privacy?
 
 A public sequence resource is about public data. Metadata can refer to
@@ -180,6 +189,15 @@ private data. You can use your own (anonymous) identifiers.  We also
 plan to combine identifiers with clinical data stored securely at
 [[https://redcap-covid19.elixir-luxembourg.org/redcap/][REDCap]]. See the relevant [[https://github.com/arvados/bh20-seq-resource/issues/21][tracker]] for more information and contributing.
 
+* Do you have any checks or concerns if human sequence accidentally submitted to your service as part of a fastq? *
+
+We are planning to remove reads that match the human reference.
+
+* Does PubSeq support only SARS-CoV-2 data? *
+
+To date, PubSeq is a resource specific to SARS-CoV-2, but we are designing it to be able to support other species in the future.
+
+
 * How do I communicate with you?
 
 We use a [[https://gitter.im/arvados/pubseq?utm_source=share-link&utm_medium=link&utm_campaign=share-link][gitter channel]] you can join.
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