From fe1402f898e3673aba725df62109df5bb2d8eef4 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Mon, 24 Aug 2020 09:12:31 +0100 Subject: Images --- doc/web/download.html | 110 +++++++++++++++++++++++++++----------------------- 1 file changed, 60 insertions(+), 50 deletions(-) (limited to 'doc/web/download.html') diff --git a/doc/web/download.html b/doc/web/download.html index 1d196a0..998c87b 100644 --- a/doc/web/download.html +++ b/doc/web/download.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + Download @@ -247,34 +247,35 @@ for the JavaScript code in this tag.

Table of Contents

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1 Workflow runs

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1 Workflow runs

The last runs can be viewed here. If you click on a run you can see @@ -285,8 +286,8 @@ is listed under Data collections. All current data is listed

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2 FASTA files

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2 FASTA files

The public sequence resource provides all uploaded sequences as @@ -296,8 +297,8 @@ also provide a single file -

3 Metadata

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3 Metadata

Metadata can be downloaded as Turtle RDF as a mergedmetadat.ttl which @@ -319,8 +320,8 @@ graph can be downloaded from below Pangenome RDF format.

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4 Pangenome

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4 Pangenome

Pangenome data is made available in multiple guises. Variation graphs @@ -328,8 +329,8 @@ Pangenome data is made available in multiple guises. Variation graphs

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4.1 Pangenome GFA format

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4.1 Pangenome GFA format

GFA is a standard for graphical fragment assembly and consumed @@ -338,8 +339,8 @@ by tools such as vgtools.

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4.2 Pangenome in ODGI format

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4.2 Pangenome in ODGI format

ODGI is a format that supports an optimised dynamic genome/graph @@ -348,8 +349,8 @@ implementation.

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4.3 Pangenome RDF format

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4.3 Pangenome RDF format

An RDF file that includes the sequences themselves in a variation @@ -360,8 +361,8 @@ graph can be downloaded from

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4.4 Pangenome Browser format

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4.4 Pangenome Browser format

The many JSON files that are named as @@ -372,8 +373,8 @@ Pangenome browser.

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5 Log of workflow output

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5 Log of workflow output

Including in below link is a log file of the last workflow runs. @@ -381,8 +382,8 @@ Including in below link is a log file of the last workflow runs.

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6 All files

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6 All files

https://collections.lugli.arvadosapi.com/c=lugli-4zz18-z513nlpqm03hpca/ @@ -390,16 +391,16 @@ Including in below link is a log file of the last workflow runs.

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7 Planned

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7 Planned

We are planning the add the following output (see also

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7.1 Raw sequence data

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7.1 Raw sequence data

See fastq tracker and BAM tracker. @@ -407,8 +408,8 @@ See fastq track

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