Download
+Table of Contents
+ +1 FASTA files
++The public sequence resource provides all uploaded sequences as +FASTA files. They can be referred to from metadata individually. We +also provide a single file FASTA download. +
+2 Metadata
++Metadata can be downloaded as Turtle RDF as a mergedmetadat.ttl which +can be loaded into any RDF triple-store. We provide a Virtuoso SPARQL +endpoint ourselves which can be queried from +http://sparql.genenetwork.org/sparql/. Query examples can be found in +our BLOG. +
+ ++The Swiss Institute of Bioinformatics has included this data in +https://covid-19-sparql.expasy.org/ and made it part of Uniprot. +
+ ++An RDF file that includes the sequences themselves in a variation +graph can be downloaded from below Pangenome RDF format. +
+3 Pangenome
++Pangenome data is made available in multiple guises. Variation graphs +(VG) provide a succinct encoding of the sequences of many genomes. +
+3.1 Pangenome GFA format
+ +3.2 Pangenome in ODGI format
++ODGI is a format that supports an optimized dynamic genome/graph +implementation. +
+3.3 Pangenome RDF format
++An RDF file that includes the sequences themselves in a variation +graph can be downloaded from +relabeledSeqs-dedup-relabeledSeqs-dedup.ttl.xz. +
+3.4 Pangenome Browser format
++The many JSON files that are named as +results/1/chunk001200.bin1.schematic.json are consumed by the +Pangenome browser. +
+4 Log of workflow output
++Including in below link is a log file of the last workflow runs. +
+