From 5f36706b7c9dc1786e47848f0ce8aabd4e7ab851 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Sat, 30 May 2020 10:46:28 -0500 Subject: BLOG: checkout output --- doc/web/download.html | 99 ++++++++++++++++++++++++++------------------------- 1 file changed, 51 insertions(+), 48 deletions(-) (limited to 'doc/web/download.html') diff --git a/doc/web/download.html b/doc/web/download.html index 2fde013..001b071 100644 --- a/doc/web/download.html +++ b/doc/web/download.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + Download @@ -247,42 +247,45 @@ for the JavaScript code in this tag.

Table of Contents

-
-

1 Workflow runs

+
+

1 Workflow runs

-The last runs can be viewed here. +The last runs can be viewed here. If you click on a run you can see +the workflows that ran under Processes. Output (also intermediate) +is listed under Data collections. All current data is listed +here. Note that it takes time for a run to complete and show.

-
-

2 FASTA files

+
+

2 FASTA files

The public sequence resource provides all uploaded sequences as @@ -292,8 +295,8 @@ also provide a single file -

3 Metadata

+
+

3 Metadata

Metadata can be downloaded as Turtle RDF as a mergedmetadat.ttl which @@ -315,8 +318,8 @@ graph can be downloaded from below Pangenome RDF format.

-
-

4 Pangenome

+
+

4 Pangenome

Pangenome data is made available in multiple guises. Variation graphs @@ -324,8 +327,8 @@ Pangenome data is made available in multiple guises. Variation graphs

-
-

4.1 Pangenome GFA format

+
+

4.1 Pangenome GFA format

GFA is a standard for graphical fragment assembly and consumed @@ -334,8 +337,8 @@ by tools such as vgtools.

-
-

4.2 Pangenome in ODGI format

+
+

4.2 Pangenome in ODGI format

ODGI is a format that supports an optimised dynamic genome/graph @@ -344,8 +347,8 @@ implementation.

-
-

4.3 Pangenome RDF format

+
+

4.3 Pangenome RDF format

An RDF file that includes the sequences themselves in a variation @@ -356,8 +359,8 @@ graph can be downloaded from

-
-

4.4 Pangenome Browser format

+
+

4.4 Pangenome Browser format

The many JSON files that are named as @@ -368,8 +371,8 @@ Pangenome browser.

-
-

5 Log of workflow output

+
+

5 Log of workflow output

Including in below link is a log file of the last workflow runs. @@ -377,8 +380,8 @@ Including in below link is a log file of the last workflow runs.

-
-

6 All files

+
+

6 All files

https://collections.lugli.arvadosapi.com/c=lugli-4zz18-z513nlpqm03hpca/ @@ -386,16 +389,16 @@ Including in below link is a log file of the last workflow runs.

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-

7 Planned

+
+

7 Planned

We are planning the add the following output (see also

-
-

7.1 Raw sequence data

+
+

7.1 Raw sequence data

See fastq tracker and BAM tracker. @@ -403,8 +406,8 @@ See fastq track

-
-

7.2 Multiple Sequence Alignment (MSA)

+
-
-

7.3 Phylogenetic tree

+
-
-

7.4 Protein prediction

+
+

7.4 Protein prediction

We aim to make protein predictions available. @@ -432,7 +435,7 @@ We aim to make protein predictions available.

-
Created by
Pjotr Prins (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!
Modified 2020-05-29 Fri 08:27
. +
Created by Pjotr Prins (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!
Modified 2020-05-30 Sat 10:40
.
-- cgit v1.2.3