From c69046ee9a5e24eadcd8cb885633328b0fd88011 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 17 Jul 2020 11:06:33 +0100
Subject: Update generated docs

---
 doc/blog/using-covid-19-pubseq-part4.html | 44 ++++++++++++++++++++++++-------
 1 file changed, 34 insertions(+), 10 deletions(-)

(limited to 'doc/blog/using-covid-19-pubseq-part4.html')
diff --git a/doc/blog/using-covid-19-pubseq-part4.html b/doc/blog/using-covid-19-pubseq-part4.html
index b5a05ca..c975c21 100644
--- a/doc/blog/using-covid-19-pubseq-part4.html
+++ b/doc/blog/using-covid-19-pubseq-part4.html
@@ -3,7 +3,7 @@
 "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
 <head>
-<!-- 2020-07-12 Sun 06:24 -->
+<!-- 2020-07-17 Fri 05:04 -->
 <meta http-equiv="Content-Type" content="text/html;charset=utf-8" />
 <meta name="viewport" content="width=device-width, initial-scale=1" />
 <title>COVID-19 PubSeq (part 4)</title>
@@ -161,6 +161,19 @@
   .footdef  { margin-bottom: 1em; }
   .figure { padding: 1em; }
   .figure p { text-align: center; }
+  .equation-container {
+    display: table;
+    text-align: center;
+    width: 100%;
+  }
+  .equation {
+    vertical-align: middle;
+  }
+  .equation-label {
+    display: table-cell;
+    text-align: right;
+    vertical-align: middle;
+  }
   .inlinetask {
     padding: 10px;
     border: 2px solid gray;
@@ -186,7 +199,7 @@
 @licstart  The following is the entire license notice for the
 JavaScript code in this tag.
 
-Copyright (C) 2012-2018 Free Software Foundation, Inc.
+Copyright (C) 2012-2020 Free Software Foundation, Inc.
 
 The JavaScript code in this tag is free software: you can
 redistribute it and/or modify it under the terms of the GNU
@@ -235,15 +248,16 @@ for the JavaScript code in this tag.
 <h2>Table of Contents</h2>
 <div id="text-table-of-contents">
 <ul>
-<li><a href="#org8f8b64a">1. What does this mean?</a></li>
-<li><a href="#orgcc7a403">2. Modify Workflow</a></li>
+<li><a href="#orgc2ee09f">1. What does this mean?</a></li>
+<li><a href="#org0d37881">2. Where can I find the workflows?</a></li>
+<li><a href="#orgddb0531">3. Modify Workflow</a></li>
 </ul>
 </div>
 </div>
 
 
-<div id="outline-container-org8f8b64a" class="outline-2">
-<h2 id="org8f8b64a"><span class="section-number-2">1</span> What does this mean?</h2>
+<div id="outline-container-orgc2ee09f" class="outline-2">
+<h2 id="orgc2ee09f"><span class="section-number-2">1</span> What does this mean?</h2>
 <div class="outline-text-2" id="text-1">
 <p>
 This means that when someone uploads a SARS-CoV-2 sequence using one
@@ -253,18 +267,28 @@ which triggers a rerun of our workflows.
 </div>
 </div>
 
-
-<div id="outline-container-orgcc7a403" class="outline-2">
-<h2 id="orgcc7a403"><span class="section-number-2">2</span> Modify Workflow</h2>
+<div id="outline-container-org0d37881" class="outline-2">
+<h2 id="org0d37881"><span class="section-number-2">2</span> Where can I find the workflows?</h2>
 <div class="outline-text-2" id="text-2">
 <p>
+Workflows are written in the common workflow language (CWL) and listed
+on <a href="https://github.com/arvados/bh20-seq-resource/tree/master/workflows">github</a>. PubSeq being an open project these workflows can be studied
+and modified!
+</p>
+</div>
+</div>
+
+<div id="outline-container-orgddb0531" class="outline-2">
+<h2 id="orgddb0531"><span class="section-number-2">3</span> Modify Workflow</h2>
+<div class="outline-text-2" id="text-3">
+<p>
 <i>Work in progress!</i>
 </p>
 </div>
 </div>
 </div>
 <div id="postamble" class="status">
-<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-07-12 Sun 06:24</small>.
+<hr><small>Created by <a href="http://thebird.nl/">Pjotr Prins</a> (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!<br />Modified 2020-07-17 Fri 01:47</small>.
 </div>
 </body>
 </html>
-- 
cgit v1.2.3

