From 5f36706b7c9dc1786e47848f0ce8aabd4e7ab851 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Sat, 30 May 2020 10:46:28 -0500
Subject: BLOG: checkout output

---
 doc/blog/using-covid-19-pubseq-part3.org | 8 ++++++++
 1 file changed, 8 insertions(+)

(limited to 'doc/blog/using-covid-19-pubseq-part3.org')

diff --git a/doc/blog/using-covid-19-pubseq-part3.org b/doc/blog/using-covid-19-pubseq-part3.org
index ade902d..4dd3078 100644
--- a/doc/blog/using-covid-19-pubseq-part3.org
+++ b/doc/blog/using-covid-19-pubseq-part3.org
@@ -18,6 +18,7 @@
    - [[#obligatory-fields][Obligatory fields]]
    - [[#optional-fields][Optional fields]]
  - [[#step-3-submit-to-covid-19-pubseq][Step 3: Submit to COVID-19 PubSeq]]
+ - [[#step-4-check-output][Step 4: Check output]]
    - [[#trouble-shooting][Trouble shooting]]
 
 * Introduction
@@ -135,6 +136,13 @@ Once you have the sequence and the metadata together, hit
 the 'Add to Pangenome' button. The data will be checked,
 submitted and the workflows should kick in!
 
+* Step 4: Check output
+
+The current pipeline takes 5.5 hours to complete! Once it completes
+the updated data can be checked on the [[./download][DOWNLOAD]] page. After completion
+of above output this [[http://sparql.genenetwork.org/sparql/?default-graph-uri=&query=PREFIX+pubseq%3A+%3Chttp%3A%2F%2Fbiohackathon.org%2Fbh20-seq-schema%23MainSchema%2F%3E%0D%0APREFIX+sio%3A+%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2F%3E%0D%0Aselect+distinct+%3Fsample+%3Fp+%3Fo%0D%0A%7B%0D%0A+++%3Fsample+sio%3ASIO_000115+%22MT536190.1%22+.%0D%0A+++%3Fsample+%3Fp+%3Fo+.%0D%0A%7D&format=text%2Fhtml&timeout=0&debug=on&run=+Run+Query+][SPARQL query]] shows some of the metadata we put
+in.
+
 ** Trouble shooting
 
 We got an error saying: {"stem": "http://www.wikidata.org/entity/",...
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