From 5b61a6901609b1b0c467c40681742ddb2e51592a Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 13 May 2020 10:09:17 -0500
Subject: Guix version of uploader works. Updated instructions.

---
 doc/INSTALL.md | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

(limited to 'doc/INSTALL.md')

diff --git a/doc/INSTALL.md b/doc/INSTALL.md
index 8f4b2f0..d9948e6 100644
--- a/doc/INSTALL.md
+++ b/doc/INSTALL.md
@@ -1,3 +1,5 @@
+#+OPTIONS: ^:nil
+
 # INSTALLATION
 
 Other options for running this tool.
@@ -29,12 +31,15 @@ arvados-python-client-2.0.1 ciso8601-2.1.3 future-0.18.2 google-api-python-clien
 3. Run the tool directly with
 
 ```sh
-guix environment guix --ad-hoc git python openssl python-pycurl python-magic nss-certs python-pyshex -- python3 bh20sequploader/main.py example/sequence.fasta example/metadata.yaml
+guix environment guix --ad-hoc git python openssl python-pycurl python-magic nss-certs python-pyshex -- python3 bh20sequploader/main.py example/sequence.fasta example/maximum_metadata_example.yaml
 ```
 
 Note that python-pyshex is packaged in
 http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics
 
+so you'll need it to the GUIX_PACKAGE_PATH - see the README in that
+repository.
+
 ### Using the Web Uploader
 
 To run the web uploader in a GNU Guix environment/container
@@ -50,3 +55,5 @@ guix environment guix --ad-hoc git python python-flask python-pyyaml python-pycu
 ```
 
 WIP: add gunicorn container
+
+Note: see above on GUIX_PACKAGE_PATH.
-- 
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