From 4299c750728bbad4bdbf0311ff2a4b9c65d9883c Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Thu, 27 Aug 2020 00:18:24 +0200
Subject: updated dependency from clustalw to minimap2; the genbank script no
 longer creates YAML/FASTA pairs for too short sequences

---
 doc/INSTALL.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'doc/INSTALL.md')

diff --git a/doc/INSTALL.md b/doc/INSTALL.md
index 3b270dd..e31b7d7 100644
--- a/doc/INSTALL.md
+++ b/doc/INSTALL.md
@@ -59,7 +59,7 @@ WIP: add gunicorn container
 Currently the full webserver container deploy command looks like
 
 ```
-penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$  env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic  nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc clustalw python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run
+penguin2:~/iwrk/opensource/code/vg/bh20-seq-resource$  env GUIX_PACKAGE_PATH=~/iwrk/opensource/guix/guix-oinformatics/ ~/iwrk/opensource/guix/guix/pre-inst-env guix environment -C guix --ad-hoc git python python-flask python-pyyaml python-pycurl python-magic  nss-certs python-pyshex python-pyyaml --network openssl python-pyshex python-pyshexc minimap2 python-schema-salad python-arvados-python-client --share=/export/tmp -- env TMPDIR=/export/tmp FLASK_ENV=development FLASK_APP=bh20simplewebuploader/main.py flask run
 ```
 
 Note: see above on GUIX_PACKAGE_PATH.
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