From cab2f4ca70c08d9f44442ba01bdfa5639017084b Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Sat, 22 Aug 2020 11:04:56 +0100 Subject: Repositioning content --- bh20simplewebuploader/main.py | 5 ++ bh20simplewebuploader/templates/banner.html | 2 +- bh20simplewebuploader/templates/blurb.html | 13 ++++- bh20simplewebuploader/templates/footer.html | 2 +- bh20simplewebuploader/templates/home.html | 78 ++++++++++++++++------------- bh20simplewebuploader/templates/menu.html | 1 + 6 files changed, 63 insertions(+), 38 deletions(-) (limited to 'bh20simplewebuploader') diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py index 62ec5cd..3dbe49a 100644 --- a/bh20simplewebuploader/main.py +++ b/bh20simplewebuploader/main.py @@ -658,6 +658,11 @@ def about_page(): buf = get_html_body('doc/web/about.html','https://github.com/arvados/bh20-seq-resource/blob/master/doc/web/about.org') return render_template('about.html',menu='ABOUT',embed=buf) +@app.route('/contact') +def contact_page(): + buf = get_html_body('doc/web/contact.html','https://github.com/arvados/bh20-seq-resource/blob/master/doc/web/contact.org') + return render_template('about.html',menu='CONTACT',embed=buf) + ## Dynamic API functions starting here ## This is quick and dirty for now, just to get something out and demonstrate the queries ## Feel free to rename the functions/endpoints, feel free to process result so we get nicer JSON diff --git a/bh20simplewebuploader/templates/banner.html b/bh20simplewebuploader/templates/banner.html index 8f2b09a..32db983 100644 --- a/bh20simplewebuploader/templates/banner.html +++ b/bh20simplewebuploader/templates/banner.html @@ -2,6 +2,6 @@

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource

-

Database contains public sequences!

+

public sequences ready for download!

diff --git a/bh20simplewebuploader/templates/blurb.html b/bh20simplewebuploader/templates/blurb.html index 8b65afa..e58bf78 100644 --- a/bh20simplewebuploader/templates/blurb.html +++ b/bh20simplewebuploader/templates/blurb.html @@ -6,7 +6,15 @@ virus strains. PubSeq allows anyone to upload sequence material in the form of FASTA or fastq files with accompanying metadata through a web interface or REST API. - +

+

+ PubSeq accepts sequence material from all sources (notably in FASTA + format). PubSeq also provides specific workflows for Oxford Nanopore + analysis in FASTQ format. If you need help analysing FAST5 or FASTQ + data, feel free to contact us! Also for + commercial support and Cloud pipelines you can reach out to us. +

+

COVID-19 PubSeq is also a repository for sequences with a low barrier to entry for uploading sequence data using best practices, including FAIR @@ -14,7 +22,8 @@ standards and, perhaps most importantly, providing standardised workflows that get triggered on upload, so that results are immediately available in standardised data formats. - +

+

Your uploaded sequence will automatically be processed and incorporated into the public pangenome with metadata using worklows from the High Performance Open Biology Lab diff --git a/bh20simplewebuploader/templates/footer.html b/bh20simplewebuploader/templates/footer.html index 3a405de..f78e8bf 100644 --- a/bh20simplewebuploader/templates/footer.html +++ b/bh20simplewebuploader/templates/footer.html @@ -19,7 +19,7 @@ BCC2020 COVID19 PubSeq Poster -

SPONSORS

+

OUR SPONSORS

diff --git a/bh20simplewebuploader/templates/home.html b/bh20simplewebuploader/templates/home.html index bede611..367f6e2 100644 --- a/bh20simplewebuploader/templates/home.html +++ b/bh20simplewebuploader/templates/home.html @@ -8,40 +8,50 @@
-

- Make your sequence - data FAIR. Upload - your SARS-CoV-2 sequence (FASTA or FASTQ - formats) with metadata (JSONLD) to - the public sequence - resource. The upload will trigger a - recompute with all available sequences into a - Pangenome available for - download! -

-

- Your uploaded sequence will automatically be - processed and incorporated into the public - pangenome with metadata using worklows from - the High Performance Open Biology Lab - defined here. All - data is published under - a Creative - Commons license You can take the published - (GFA/RDF/FASTA) data and store it in a triple - store for further processing. Clinical - data can be stored - securely - at REDCap. -

-

- Note that form fields contain - web ontology - URI's - for disambiguation - and machine readable metadata. For examples of - use, see the BLOG. -

+ +

+ COVID-19 PubSeq is a free and open online + bioinformatics public sequence resource with + on-the-fly analysis of sequenced SARS-CoV-2 + samples that allows for a quick turnaround in + identification of new virus strains. PubSeq allows + anyone to upload sequence material in the form of + FASTA or fastq files with accompanying metadata + through the web interface or REST API. +

+

+ Make your sequence + data FAIR. Upload + your SARS-CoV-2 sequence (FASTA or FASTQ formats) + with simple metadata (JSONLD) to + the public sequence + resource. The upload will trigger a recompute + with all available sequences into a Pangenome + available for + download! +

+

+ Your uploaded sequence will automatically be + processed and incorporated into the public + pangenome with metadata using worklows from the + High Performance Open Biology Lab + defined here. All + data is published under + a Creative + Commons license You can take the published + (GFA/RDF/FASTA) data and store it in a triple + store for further processing. Clinical data can + be stored securely + at REDCap. +

+

+ Note that form fields contain + web ontology + URI's + for disambiguation + and machine readable metadata. For examples of + use, see the BLOG. +

diff --git a/bh20simplewebuploader/templates/menu.html b/bh20simplewebuploader/templates/menu.html index d408171..5d5fdc8 100644 --- a/bh20simplewebuploader/templates/menu.html +++ b/bh20simplewebuploader/templates/menu.html @@ -8,6 +8,7 @@ EXPORT BLOG ABOUT + CONTACT -- cgit v1.2.3