From cab2f4ca70c08d9f44442ba01bdfa5639017084b Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Sat, 22 Aug 2020 11:04:56 +0100 Subject: Repositioning content --- bh20simplewebuploader/templates/banner.html | 2 +- bh20simplewebuploader/templates/blurb.html | 13 ++++- bh20simplewebuploader/templates/footer.html | 2 +- bh20simplewebuploader/templates/home.html | 78 ++++++++++++++++------------- bh20simplewebuploader/templates/menu.html | 1 + 5 files changed, 58 insertions(+), 38 deletions(-) (limited to 'bh20simplewebuploader/templates') diff --git a/bh20simplewebuploader/templates/banner.html b/bh20simplewebuploader/templates/banner.html index 8f2b09a..32db983 100644 --- a/bh20simplewebuploader/templates/banner.html +++ b/bh20simplewebuploader/templates/banner.html @@ -2,6 +2,6 @@
Database contains public sequences!
+public sequences ready for download!
diff --git a/bh20simplewebuploader/templates/blurb.html b/bh20simplewebuploader/templates/blurb.html index 8b65afa..e58bf78 100644 --- a/bh20simplewebuploader/templates/blurb.html +++ b/bh20simplewebuploader/templates/blurb.html @@ -6,7 +6,15 @@ virus strains. PubSeq allows anyone to upload sequence material in the form of FASTA or fastq files with accompanying metadata through a web interface or REST API. - + ++ PubSeq accepts sequence material from all sources (notably in FASTA + format). PubSeq also provides specific workflows for Oxford Nanopore + analysis in FASTQ format. If you need help analysing FAST5 or FASTQ + data, feel free to contact us! Also for + commercial support and Cloud pipelines you can reach out to us. +
+COVID-19 PubSeq is also a repository for sequences with a low barrier to entry for uploading sequence data using best practices, including FAIR @@ -14,7 +22,8 @@ standards and, perhaps most importantly, providing standardised workflows that get triggered on upload, so that results are immediately available in standardised data formats. - +
+Your uploaded sequence will automatically be processed and incorporated into the public pangenome with metadata using worklows from the High Performance Open Biology Lab diff --git a/bh20simplewebuploader/templates/footer.html b/bh20simplewebuploader/templates/footer.html index 3a405de..f78e8bf 100644 --- a/bh20simplewebuploader/templates/footer.html +++ b/bh20simplewebuploader/templates/footer.html @@ -19,7 +19,7 @@ -
- Make your sequence - data FAIR. Upload - your SARS-CoV-2 sequence (FASTA or FASTQ - formats) with metadata (JSONLD) to - the public sequence - resource. The upload will trigger a - recompute with all available sequences into a - Pangenome available for - download! -
-- Your uploaded sequence will automatically be - processed and incorporated into the public - pangenome with metadata using worklows from - the High Performance Open Biology Lab - defined here. All - data is published under - a Creative - Commons license You can take the published - (GFA/RDF/FASTA) data and store it in a triple - store for further processing. Clinical - data can be stored - securely - at REDCap. -
-- Note that form fields contain - web ontology - URI's - for disambiguation - and machine readable metadata. For examples of - use, see the BLOG. -
+ ++ COVID-19 PubSeq is a free and open online + bioinformatics public sequence resource with + on-the-fly analysis of sequenced SARS-CoV-2 + samples that allows for a quick turnaround in + identification of new virus strains. PubSeq allows + anyone to upload sequence material in the form of + FASTA or fastq files with accompanying metadata + through the web interface or REST API. +
++ Make your sequence + data FAIR. Upload + your SARS-CoV-2 sequence (FASTA or FASTQ formats) + with simple metadata (JSONLD) to + the public sequence + resource. The upload will trigger a recompute + with all available sequences into a Pangenome + available for + download! +
++ Your uploaded sequence will automatically be + processed and incorporated into the public + pangenome with metadata using worklows from the + High Performance Open Biology Lab + defined here. All + data is published under + a Creative + Commons license You can take the published + (GFA/RDF/FASTA) data and store it in a triple + store for further processing. Clinical data can + be stored securely + at REDCap. +
++ Note that form fields contain + web ontology + URI's + for disambiguation + and machine readable metadata. For examples of + use, see the BLOG. +