- Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the public sequence resource. The upload will trigger a
- recompute with all available sequences into a Pangenome
- available for
- download!
- Your uploaded sequence will automatically be processed
- and incorporated into the public pangenome with
- metadata using worklows from the High Performance Open Biology Lab defined here. All data is published under
- a Creative
- Commons 4.0 attribution license (CC-BY-4.0). You
- can take the published (GFA/RDF/FASTA) data and store it in
- a triple store for further processing. We also plan to
- combine identifiers with clinical data stored securely at REDCap.
- A free command line version of the uploader can be
- installed from source.
-
+
+
+ Upload your SARS-CoV-2 sequence (FASTA or FASTQ formats) with metadata (JSONLD) to the public sequence resource. The upload will trigger a
+ recompute with all available sequences into a Pangenome
+ available for
+ download!
+
+
+ Your uploaded sequence will automatically be processed
+ and incorporated into the public pangenome with
+ metadata using worklows from the High Performance Open Biology Lab defined here. All data is published under
+ a Creative
+ Commons 4.0 attribution license (CC-BY-4.0). You
+ can take the published (GFA/RDF/FASTA) data and store it in
+ a triple store for further processing. We also plan to
+ combine identifiers with clinical data stored securely at REDCap.
+ A free command line version of the uploader can be
+ installed from source.
+
+
+
+
Upload SARS-CoV-2 Sequence
+
@@ -138,37 +149,37 @@
-
-
ABOUT
-
- This a public repository created at the COVID-19 BioHackathon
- that has a low barrier to entry for uploading sequence data using
- best practices. I.e., data is published with a creative commons
- 4.0 (CC-4.0) license with metadata using state-of-the art
- standards and, perhaps most importantly, providing standardized
- workflows that get triggered on upload, so that results are
- immediately available in standardized data formats. The repository
- will be maintained and expanded for the duration of the
- pandemic. To contribute data simply upload it! To contribute code
- and/or workflows see
- the project
- repository. For more information see the paper (WIP).
-
-
-
+
+
ABOUT
+
+ This a public repository created at the COVID-19 BioHackathon
+ that has a low barrier to entry for uploading sequence data using
+ best practices. I.e., data is published with a creative commons
+ 4.0 (CC-4.0) license with metadata using state-of-the art
+ standards and, perhaps most importantly, providing standardized
+ workflows that get triggered on upload, so that results are
+ immediately available in standardized data formats. The repository
+ will be maintained and expanded for the duration of the
+ pandemic. To contribute data simply upload it! To contribute code
+ and/or workflows see
+ the project
+ repository. For more information see the paper (WIP).
+
-
+
+
+