From fa4260ad08b7aefaea3ea7b64f87ddc221c57cc3 Mon Sep 17 00:00:00 2001
From: Adam Novak
Date: Mon, 20 Apr 2020 11:27:30 -0700
Subject: Put back Intersex with the closest PATO equivalent

These options still disagree with the doc string in the schema.---
 bh20sequploader/bh20seq-options.yml | 1 +
 1 file changed, 1 insertion(+)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml
index da47e1a..7320ecf 100644
--- a/bh20sequploader/bh20seq-options.yml
+++ b/bh20sequploader/bh20seq-options.yml
@@ -13,6 +13,7 @@ host_age_unit:
 host_sex:
   Male: http://purl.obolibrary.org/obo/PATO_0000384
   Female: http://purl.obolibrary.org/obo/PATO_0000383
+  Intersex: http://purl.obolibrary.org/obo/PATO_0001340
 
 sample_sequencing_technology:
   Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
-- 
cgit v1.2.3


From b8804933e540aa9231b4a3c406553d7df9d97e0e Mon Sep 17 00:00:00 2001
From: Adam Novak
Date: Mon, 20 Apr 2020 11:30:09 -0700
Subject: Make doc not contradict option list

---
 bh20sequploader/bh20seq-schema.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 64008f2..bbcafc8 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -24,7 +24,7 @@ $graph:
         jsonldPredicate:
           _id: http://semanticscience.org/resource/SIO_000115
     host_sex:
-        doc: Sex of the host as defined in NCIT, IRI expected (http://purl.obolibrary.org/obo/NCIT_C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female), http://purl.obolibrary.org/obo/NCIT_C45908 (Intersex), or http://purl.obolibrary.org/obo/NCIT_C17998 (Unknown))
+        doc: Sex of the host, IRI expected
         type: string?
         jsonldPredicate:
           _id: http://purl.obolibrary.org/obo/PATO_0000047
-- 
cgit v1.2.3