From c754aab95f47317228a07ccbe3818780aa22a52a Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Fri, 4 Sep 2020 12:34:54 +0200 Subject: fixed bugs in in index management and type conversion --- bh20sequploader/main.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'bh20sequploader') diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index 314a2ea..f8127af 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -47,8 +47,8 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): raise ValueError("It is possible to upload just one FASTA file at a time") target.append(qc_fasta(sequence_p2)) - target[0] = ("reads_1."+target[0][0][6:], target[0][1]) - target[1] = ("reads_2."+target[1][0][6:], target[0][1]) + target[0] = ("reads_1."+target[0][0][6:], target[0][1], target[0][2]) + target[1] = ("reads_2."+target[1][0][6:], target[1][1], target[1][2]) if do_qc and target[0][2] == 'text/fasta' and sample_id != target[0][1]: raise ValueError("The sample_id field in the metadata must be the same as the FASTA header") -- cgit v1.2.3