From 3a10517123c261d5ce26f174b97764fcaad06e93 Mon Sep 17 00:00:00 2001
From: Adam Novak
Date: Fri, 17 Apr 2020 12:02:51 -0700
Subject: Create option dropdowns from an options file

---
 bh20sequploader/bh20seq-options.yml | 16 ++++++++++++++++
 1 file changed, 16 insertions(+)
 create mode 100644 bh20sequploader/bh20seq-options.yml

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml
new file mode 100644
index 0000000..02e911f
--- /dev/null
+++ b/bh20sequploader/bh20seq-options.yml
@@ -0,0 +1,16 @@
+# Contains suggested human-readable field values and their corresponding IRIs.
+# Keyed on the field names in the types in the schema. Relies on field names
+# being unique or at least using the same options in different containing
+# types.
+
+host_age_unit:
+  year: http://purl.obolibrary.org/obo/UO_0000036
+  month: http://purl.obolibrary.org/obo/UO_0000035
+  week: http://purl.obolibrary.org/obo/UO_0000035
+  day: http://purl.obolibrary.org/obo/UO_0000034
+  hour: http://purl.obolibrary.org/obo/UO_0000032
+
+host_sex:
+  Male: http://purl.obolibrary.org/obo/NCIT_C20197
+  Female: http://purl.obolibrary.org/obo/NCIT_C27993
+  unknown: http://purl.obolibrary.org/obo/NCIT_C17998
-- 
cgit v1.2.3


From c536f92264e094d4a59c1fdcb6a3aea64c0035b2 Mon Sep 17 00:00:00 2001
From: Adam Novak
Date: Fri, 17 Apr 2020 12:18:53 -0700
Subject: Spruce up the options file and add missing values

---
 bh20sequploader/bh20seq-options.yml | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/bh20seq-options.yml b/bh20sequploader/bh20seq-options.yml
index 02e911f..d05be5a 100644
--- a/bh20sequploader/bh20seq-options.yml
+++ b/bh20sequploader/bh20seq-options.yml
@@ -4,13 +4,14 @@
 # types.
 
 host_age_unit:
-  year: http://purl.obolibrary.org/obo/UO_0000036
-  month: http://purl.obolibrary.org/obo/UO_0000035
-  week: http://purl.obolibrary.org/obo/UO_0000035
-  day: http://purl.obolibrary.org/obo/UO_0000034
-  hour: http://purl.obolibrary.org/obo/UO_0000032
+  Years: http://purl.obolibrary.org/obo/UO_0000036
+  Months: http://purl.obolibrary.org/obo/UO_0000035
+  Weeks: http://purl.obolibrary.org/obo/UO_0000034
+  Days: http://purl.obolibrary.org/obo/UO_0000033
+  Hours: http://purl.obolibrary.org/obo/UO_0000032
 
 host_sex:
   Male: http://purl.obolibrary.org/obo/NCIT_C20197
   Female: http://purl.obolibrary.org/obo/NCIT_C27993
-  unknown: http://purl.obolibrary.org/obo/NCIT_C17998
+  Intersex: http://purl.obolibrary.org/obo/NCIT_C45908
+  Unknown: http://purl.obolibrary.org/obo/NCIT_C17998
-- 
cgit v1.2.3


From 88e6bb6e82f606c91fca6b3edd410cb28146f569 Mon Sep 17 00:00:00 2001
From: Adam Novak
Date: Fri, 17 Apr 2020 12:19:33 -0700
Subject: Copy NCIT IRIs back to schema doc

---
 bh20sequploader/bh20seq-schema.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index d8641a6..0520e36 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -30,7 +30,7 @@ $graph:
 #        jsonldPredicate:
 #          _id: http://purl.obolibrary.org/obo/NOMEN_0000037
     host_sex:
-        doc: Sex of the host as define in NCIT, IRI expected (http://purl.obolibrary.org/obo/C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female) or unkown (http://purl.obolibrary.org/obo/NCIT_C17998))
+        doc: Sex of the host as defined in NCIT, IRI expected (http://purl.obolibrary.org/obo/NCIT_C20197 (Male), http://purl.obolibrary.org/obo/NCIT_C27993 (Female), http://purl.obolibrary.org/obo/NCIT_C45908 (Intersex), or http://purl.obolibrary.org/obo/NCIT_C17998 (Unknown))
         type: string
         jsonldPredicate:
           _id: http://purl.obolibrary.org/obo/PATO_0000047
-- 
cgit v1.2.3