From bc62d3f4c9ed8d94e536d2dd67fedf40b3e011ab Mon Sep 17 00:00:00 2001
From: lltommy
Date: Mon, 13 Apr 2020 02:36:18 +0200
Subject: Starting to turn values into IRIs ...
---
bh20sequploader/bh20seq-schema.yml | 10 +++++++---
1 file changed, 7 insertions(+), 3 deletions(-)
(limited to 'bh20sequploader')
diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 81a7f22..2d2e4c9 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -13,11 +13,11 @@ $graph:
type: record
fields:
host_species:
- ## autocomplete # NCBITAXON
doc: Host species as defined in NCBITaxon (e.g. http://purl.obolibrary.org/obo/NCBITaxon_9606 for Homo sapiens)
type: string
jsonldPredicate:
_id: http://www.ebi.ac.uk/efo/EFO_0000532
+ _type: "@id"
host_id:
doc: Identifer for the host. If you submit multiple samples from the same host, use the same host_id for those samples
type: string
@@ -33,16 +33,18 @@ $graph:
type: string
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000047
+ _type: "@id"
host_age:
doc: Age of the host as number (e.g. 50)
type: int?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/PATO_0000011
host_age_unit:
- doc: Unit of host age.... this field is unstable as of now (might be removed)
+ doc: Unit of host age e.g. http://purl.obolibrary.org/obo/UO_0000036
type: string?
jsonldPredicate:
- _id: http://purl.obolibrary.org/obo/UO_0000036
+ _id: http://purl.obolibrary.org/obo/NCIT_C42574
+ _type: "@id"
host_health_status:
doc: A condition or state at a particular time
type: string?
@@ -91,6 +93,7 @@ $graph:
type: string?
jsonldPredicate:
_id: http://purl.obolibrary.org/obo/GAZ_00000448
+ _type: "@id"
sample_storage_conditions:
doc: Information aboout storage of a specified type, e.g. frozen specimen, paraffin, fresh ....
type: string?
@@ -120,6 +123,7 @@ $graph:
type: string?
jsonldPredicate:
_id: http://edamontology.org/data_1875
+ _type: "@id"
virus_strain:
doc: Name of the virus strain
type: string?
--
cgit 1.4.1