From b4b4b826ae477acdb5d2c3372a69673029ea805c Mon Sep 17 00:00:00 2001
From: AndreaGuarracino
Date: Wed, 26 Aug 2020 17:16:14 +0200
Subject: updated parameter name

---
 bh20sequploader/main.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py
index 6049bf9..d5de63e 100644
--- a/bh20sequploader/main.py
+++ b/bh20sequploader/main.py
@@ -38,7 +38,7 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True):
     target = []
     try:
         log.debug("FASTA/FASTQ QC" if do_qc else "Limited FASTA/FASTQ QC")
-        target.append(qc_fasta(sequence_p1, check_with_clustalw=do_qc))
+        target.append(qc_fasta(sequence_p1, check_with_mimimap2=do_qc))
         if sequence_p2:
             target.append(qc_fasta(sequence_p2))
             target[0] = ("reads_1."+target[0][0][6:], target[0][1])
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