From b4b4b826ae477acdb5d2c3372a69673029ea805c Mon Sep 17 00:00:00 2001 From: AndreaGuarracino Date: Wed, 26 Aug 2020 17:16:14 +0200 Subject: updated parameter name --- bh20sequploader/main.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) (limited to 'bh20sequploader') diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py index 6049bf9..d5de63e 100644 --- a/bh20sequploader/main.py +++ b/bh20sequploader/main.py @@ -38,7 +38,7 @@ def qc_stuff(metadata, sequence_p1, sequence_p2, do_qc=True): target = [] try: log.debug("FASTA/FASTQ QC" if do_qc else "Limited FASTA/FASTQ QC") - target.append(qc_fasta(sequence_p1, check_with_clustalw=do_qc)) + target.append(qc_fasta(sequence_p1, check_with_mimimap2=do_qc)) if sequence_p2: target.append(qc_fasta(sequence_p2)) target[0] = ("reads_1."+target[0][0][6:], target[0][1]) -- cgit v1.2.3