From 46e28c1d5da1c242fe49e5e5d6fdcae7dc544070 Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Wed, 8 Jul 2020 15:48:44 -0400
Subject: Hack in a valid-uri check

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 bh20sequploader/qc_metadata.py | 4 ++++
 1 file changed, 4 insertions(+)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/qc_metadata.py b/bh20sequploader/qc_metadata.py
index 2b57991..3e1e471 100644
--- a/bh20sequploader/qc_metadata.py
+++ b/bh20sequploader/qc_metadata.py
@@ -27,6 +27,10 @@ def qc_metadata(metadatafile):
     g = schema_salad.jsonld_context.makerdf("workflow", doc, document_loader.ctx)
     rslt, reason = evaluate(g, shex, doc["id"], "https://raw.githubusercontent.com/arvados/bh20-seq-resource/master/bh20sequploader/bh20seq-shex.rdf#submissionShape")
 
+    # As part of QC make sure serialization works too, this will raise
+    # an exception if there are invalid URIs.
+    g.serialize(format="ntriples")
+
     if not rslt:
         raise Exception(reason)
 
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