From 2cd6623aa0ddfe4e42b2d434e0523773bb3536ef Mon Sep 17 00:00:00 2001
From: Adam Novak
Date: Thu, 9 Apr 2020 15:52:23 -0700
Subject: Copy over/combine top-level project components

---
 bh20sequploader/main.py | 7 ++-----
 1 file changed, 2 insertions(+), 5 deletions(-)

(limited to 'bh20sequploader')

diff --git a/bh20sequploader/main.py b/bh20sequploader/main.py
index 8b8fefe..d3ebc0c 100644
--- a/bh20sequploader/main.py
+++ b/bh20sequploader/main.py
@@ -6,7 +6,6 @@ import json
 import urllib.request
 import socket
 import getpass
-from .qc_metadata import qc_metadata
 
 ARVADOS_API_HOST='lugli.arvadosapi.com'
 ARVADOS_API_TOKEN='2fbebpmbo3rw3x05ueu2i6nx70zhrsb1p22ycu3ry34m4x4462'
@@ -20,8 +19,6 @@ def main():
 
     api = arvados.api(host=ARVADOS_API_HOST, token=ARVADOS_API_TOKEN, insecure=True)
 
-    qc_metadata(args.metadata.name)
-
     col = arvados.collection.Collection(api_client=api)
 
     print("Reading FASTA")
@@ -32,8 +29,8 @@ def main():
             f.write(r)
             r = args.sequence.read(65536)
 
-    print("Reading metadata")
-    with col.open("metadata.yaml", "w") as f:
+    print("Reading JSONLD")
+    with col.open("metadata.jsonld", "w") as f:
         r = args.metadata.read(65536)
         print(r[0:20])
         while r:
-- 
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