From bef2a43185f9494398f5d5a8cdb6c5f34352f912 Mon Sep 17 00:00:00 2001
From: Alex Kanitz
Date: Fri, 10 Apr 2020 18:27:44 +0200
Subject: validate seq format with magic file

---
 bh20sequploader/validation/Makefile    |   4 ++++
 bh20sequploader/validation/formats     |   4 ++++
 bh20sequploader/validation/formats.mgc | Bin 0 -> 1032 bytes
 3 files changed, 8 insertions(+)
 create mode 100644 bh20sequploader/validation/Makefile
 create mode 100644 bh20sequploader/validation/formats
 create mode 100644 bh20sequploader/validation/formats.mgc

(limited to 'bh20sequploader/validation')

diff --git a/bh20sequploader/validation/Makefile b/bh20sequploader/validation/Makefile
new file mode 100644
index 0000000..1ca13fb
--- /dev/null
+++ b/bh20sequploader/validation/Makefile
@@ -0,0 +1,4 @@
+compile: formats.mgc
+
+formats.mgc :
+	file -C -m formats
diff --git a/bh20sequploader/validation/formats b/bh20sequploader/validation/formats
new file mode 100644
index 0000000..ac804cf
--- /dev/null
+++ b/bh20sequploader/validation/formats
@@ -0,0 +1,4 @@
+0	regex	\^\>.+\r?\n([acgtnACGTN]+\r?\n)*[acgtnACGTN]+(\r?\n)?$	FASTA
+!:mime	text/fasta
+0	regex	\^@.+\r?\n[acgtnACGTN]*\n\\+.*\n[!-i]*(\r\n)?	FASTQ
+!:mime	text/fastq
\ No newline at end of file
diff --git a/bh20sequploader/validation/formats.mgc b/bh20sequploader/validation/formats.mgc
new file mode 100644
index 0000000..bff282a
Binary files /dev/null and b/bh20sequploader/validation/formats.mgc differ
-- 
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