From bbca5ac9b2538e410efe3e09651f87e5573145de Mon Sep 17 00:00:00 2001
From: lltommy
Date: Sat, 18 Apr 2020 19:11:57 +0200
Subject: Extending yaml schema a bit and adding additional information for the
 UI

---
 bh20sequploader/supporting_webuploader.yml | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

(limited to 'bh20sequploader/supporting_webuploader.yml')

diff --git a/bh20sequploader/supporting_webuploader.yml b/bh20sequploader/supporting_webuploader.yml
index 6b8946f..3650526 100644
--- a/bh20sequploader/supporting_webuploader.yml
+++ b/bh20sequploader/supporting_webuploader.yml
@@ -10,6 +10,34 @@ host_sex:
   Female: http://purl.obolibrary.org/obo/NCIT_C27993
   unknown: http://purl.obolibrary.org/obo/NCIT_C17998
 
+sample_sequencing_technology:
+  Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
+  Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
+  Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
+  IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
+  Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
+  Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
+
+sample_sequencing_technology2:
+  Illumina NextSeq 500: http://www.ebi.ac.uk/efo/EFO_0009173
+  Oxford Nanopore MinION: http://www.ebi.ac.uk/efo/EFO_0008632
+  Illumina MiSeq: http://www.ebi.ac.uk/efo/EFO_0004205
+  IonTorrent: http://purl.obolibrary.org/obo/NCIT_C125894
+  Oxford Nanopore Sequencing: http://purl.obolibrary.org/obo/NCIT_C146818
+  Sanger dideoxy sequencing: http://purl.obolibrary.org/obo/NCIT_C19641
+
+specimen_source:
+  nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831
+  oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835
+  sputum: http://purl.obolibrary.org/obo/NCIT_C13278
+  bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195
+
+specimen_source2:
+  nasopharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155831
+  oropharyngeal swab: http://purl.obolibrary.org/obo/NCIT_C155835
+  sputum: http://purl.obolibrary.org/obo/NCIT_C13278
+  bronchoalveolar lavage fluid: http://purl.obolibrary.org/obo/NCIT_C13195
+
 host_species:
   OLS-ontology: ncbitaxon
 
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