From cc5db1777ad7334243dff0d9a0bbacea417b5ffb Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 29 May 2020 08:29:07 -0500
Subject: Improved error output for the web uploader

---
 bh20sequploader/qc_fasta.py | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

(limited to 'bh20sequploader/qc_fasta.py')

diff --git a/bh20sequploader/qc_fasta.py b/bh20sequploader/qc_fasta.py
index 16cf2c9..5c8cf3a 100644
--- a/bh20sequploader/qc_fasta.py
+++ b/bh20sequploader/qc_fasta.py
@@ -6,6 +6,8 @@ import tempfile
 import logging
 import re
 
+log = logging.getLogger(__name__ )
+
 def read_fasta(sequence):
     entries = 0
     bases = []
@@ -17,11 +19,12 @@ def read_fasta(sequence):
         else:
             bases.append(line)
         if entries > 1:
+            log.debug("FASTA file contains multiple entries")
             raise ValueError("FASTA file contains multiple entries")
-            break
     return label, bases
 
 def qc_fasta(sequence):
+    log.debug("Starting qc_fasta")
     schema_resource = pkg_resources.resource_stream(__name__, "validation/formats")
     with tempfile.NamedTemporaryFile() as tmp:
         tmp.write(schema_resource.read())
-- 
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