From 1b1283131f3c684bfff2c1b165565957ac01b4be Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Fri, 10 Apr 2020 16:11:29 -0400
Subject: Fix swapped fasta/fastq

Replace example sequence with COV19 reference instead of HIV.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>
---
 bh20sequploader/qc_fasta.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'bh20sequploader/qc_fasta.py')

diff --git a/bh20sequploader/qc_fasta.py b/bh20sequploader/qc_fasta.py
index e3d4fe7..e47d66b 100644
--- a/bh20sequploader/qc_fasta.py
+++ b/bh20sequploader/qc_fasta.py
@@ -21,8 +21,8 @@ def qc_fasta(sequence):
                 raise ValueError("FASTA file contains multiple entries")
                 break
         sequence.seek(0)
-        return "reads.fastq"
-    elif seq_type == "text/fastq":
         return "sequence.fasta"
+    elif seq_type == "text/fastq":
+        return "reads.fastq"
     else:
         raise ValueError("Sequence file does not look like FASTA or FASTQ")
-- 
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