From 0bfe144ca40b4dfc1d75e195f3cfae7a8af94dc0 Mon Sep 17 00:00:00 2001
From: lltommy
Date: Thu, 12 Nov 2020 14:55:33 +0100
Subject: Trying to fix the submitter shape, shex and yaml
---
bh20sequploader/bh20seq-shex.rdf | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
(limited to 'bh20sequploader/bh20seq-shex.rdf')
diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf
index 602f6a0..365a6e6 100644
--- a/bh20sequploader/bh20seq-shex.rdf
+++ b/bh20sequploader/bh20seq-shex.rdf
@@ -54,9 +54,9 @@ PREFIX wikidata:
sio:SIO_000116 xsd:string *; #(submitter_name), name, optional 0-*
sio:SIO_000172 xsd:string ?; #(submitter_address), address, optional, string
obo:NCIT_C37984 xsd:string ?; #(originating_lab) Laboratory, optional, string
- obo:NCIT_C37900 xsd:string ?; #(lab address), Provider, optional, string
- efo:EFO_0001741 xsd:string ?; #(provider_sample_id), submitter, optional ????????????????????
- obo:NCIT_C42781 xsd:string ?; #(submitter_sample_id), Author, optional string ????????????????????
+ obo:NCIT_C25407 xsd:string ?; #(lab address), Address, optional, string
+ obo:NCIT_C37900 xsd:string ?; #(provider), Provider, optional, string
+ obo:NCIT_C25364 xsd:string ?; #(submitter_sample_id), identifier, optional, string
obo:NCIT_C19026 xsd:string ?; #(publication), Scientific Publication, optional string
sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/ {0,10}; #(submitter_orcid) identifier, optional but given regular expression
sio:SIO_001167 xsd:string ?; #(additional_submitter_information), comment, optional string
@@ -64,8 +64,8 @@ PREFIX wikidata:
:technologyShape {
obo:OBI_0600047 IRI {1,3} ; #(sample_sequencing_technology), sequencing assay, optional
- efo:EFO_0004917 xsd:string ; #(alignment_protocol), high throughput sequence alignment protocol, optional
- obo:GENEPIO_0000090 [obo:GENEPIO_0001628 obo:GENEPIO_0002028 ] ? ; #(assembly method), assembly method, optional, one of the two
+ obo:GENEPIO_0000090 [obo:GENEPIO_0001628 obo:GENEPIO_0002028 ] ; #(assembly method), assembly method, mandatory, one of the two
+ efo:EFO_0004917 xsd:string ?; #(alignment_protocol), high throughput sequence alignment protocol, optional
obo:FLU_0000848 xsd:double OR xsd:integer {0,3}; #(sequence coverage) sequence coverage, optional
sio:SIO_001167 xsd:string ?; #(additional_technology_information), comment, optional, string
}
--
cgit v1.2.3