From 1b5df01d2047ab5c591f2e0400a5c46cb2dc86ea Mon Sep 17 00:00:00 2001
From: lltommy
Date: Thu, 12 Nov 2020 14:22:08 +0100
Subject: Proposed new technology shape/yaml structure

---
 bh20sequploader/bh20seq-schema.yml | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

(limited to 'bh20sequploader/bh20seq-schema.yml')

diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml
index 645be5e..2b36e99 100644
--- a/bh20sequploader/bh20seq-schema.yml
+++ b/bh20sequploader/bh20seq-schema.yml
@@ -191,11 +191,16 @@ $graph:
         _id: http://purl.obolibrary.org/obo/OBI_0600047
         _type: "@id"
         noLinkCheck: true
-    sequence_assembly_method:
+    alignment_protocol:
       doc: Field for additional information on the pipeline applied to obtain the assembly
       type: string?
       jsonldPredicate:
-        _id: http://www.ebi.ac.uk/efo/EFO_0002699
+        _id: http://www.ebi.ac.uk/efo/EFO_0004917
+    assembly_method:
+      doc: Assembly method refers to how the reads were assembled into contigs for which either a de novo (http://purl.obolibrary.org/obo/GENEPIO_0001628) or mapping/reference based (http://purl.obolibrary.org/obo/GENEPIO_0002028) strategy is used.
+      type: string?
+      jsonldPredicate:
+        _id: http://purl.obolibrary.org/obo/GENEPIO_0000090
     sequencing_coverage:
       doc: Sequence coverage defined as the average number of reads representing a given nucleotide (e.g. [100]) - if multiple technologies were used multiple float values can be submitted e.g. [100, 20]
       type: double[]?
-- 
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