From e110b52bae5a4a62ccc53970a7f26899e9debe7e Mon Sep 17 00:00:00 2001
From: Peter Amstutz
Date: Thu, 9 Apr 2020 17:48:15 -0400
Subject: Propagate metadata to pangenome so it can be merged by workflow

---
 bh20seqanalyzer/main.py | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

(limited to 'bh20seqanalyzer')

diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py
index 1a8965b..2030c1e 100644
--- a/bh20seqanalyzer/main.py
+++ b/bh20seqanalyzer/main.py
@@ -110,13 +110,20 @@ def start_pangenome_analysis(api,
                              validated_project):
     validated = arvados.util.list_all(api.collections().list, filters=[["owner_uuid", "=", validated_project]])
     inputobj = {
-        "inputReads": []
+        "inputReads": [],
+        "metadata": [],
+        "subjects": []
     }
     for v in validated:
         inputobj["inputReads"].append({
             "class": "File",
             "location": "keep:%s/sequence.fasta" % v["portable_data_hash"]
         })
+        inputobj["metadata"].append({
+            "class": "File",
+            "location": "keep:%s/metadata.yaml" % v["portable_data_hash"]
+        })
+        inputobj["subjects"].append("keep:%s/sequence.fasta" % v["portable_data_hash"])
     run_workflow(api, analysis_project, pangenome_workflow_uuid, "Pangenome analysis", inputobj)
 
 
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