From 8cf9d49ccda4ef030b73268d43103b481d158445 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Mon, 4 May 2020 13:26:21 -0400 Subject: Remove debug flag from workflow submit Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- bh20seqanalyzer/main.py | 1 - 1 file changed, 1 deletion(-) (limited to 'bh20seqanalyzer/main.py') diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py index 8d0f562..caf4c43 100644 --- a/bh20seqanalyzer/main.py +++ b/bh20seqanalyzer/main.py @@ -90,7 +90,6 @@ def run_workflow(api, parent_project, workflow_uuid, name, inputobj): cmd = ["arvados-cwl-runner", "--submit", "--no-wait", - "--debug", "--project-uuid=%s" % project["uuid"], "arvwf:%s" % workflow_uuid, tmp.name] -- cgit v1.2.3 From b6d846b5de6c67b28adab1fa520953115a1a1e30 Mon Sep 17 00:00:00 2001 From: Peter Amstutz Date: Mon, 4 May 2020 14:09:53 -0400 Subject: Sort input to hopefully get container reuse Arvados-DCO-1.1-Signed-off-by: Peter Amstutz --- bh20seqanalyzer/main.py | 1 + 1 file changed, 1 insertion(+) (limited to 'bh20seqanalyzer/main.py') diff --git a/bh20seqanalyzer/main.py b/bh20seqanalyzer/main.py index caf4c43..07e5f69 100644 --- a/bh20seqanalyzer/main.py +++ b/bh20seqanalyzer/main.py @@ -136,6 +136,7 @@ def start_pangenome_analysis(api, "location": schema_ref } } + validated.sort(key=lambda v: v["portable_data_hash"]) for v in validated: inputobj["inputReads"].append({ "class": "File", -- cgit v1.2.3