From f2d44157283cccffb60b9b2716f8568ef67fb4f5 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 27 May 2020 07:09:49 -0500 Subject: FAQ: add CC0 info --- doc/web/about.html | 135 ++++++++++++++++++++++++++++++++++------------------- doc/web/about.org | 16 +++++++ 2 files changed, 102 insertions(+), 49 deletions(-) diff --git a/doc/web/about.html b/doc/web/about.html index ca0d952..cf718e7 100644 --- a/doc/web/about.html +++ b/doc/web/about.html @@ -3,7 +3,7 @@ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> - + About/FAQ @@ -247,26 +247,28 @@ for the JavaScript code in this tag.

Table of Contents

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1 What is the 'public sequence resource' about?

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1 What is the 'public sequence resource' about?

The public sequence resource aims to provide a generic and useful @@ -277,8 +279,8 @@ sequence comparison and protein prediction.

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2 Who created the public sequence resource?

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2 Who created the public sequence resource?

The public sequence resource is an initiative by bioinformatics and @@ -298,8 +300,8 @@ wrangling experts. Thank you everyone!

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3 How does the public sequence resource compare to other data resources?

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3 How does the public sequence resource compare to other data resources?

The short version is that we use state-of-the-art practices in @@ -318,8 +320,8 @@ public resources, including GISAID.

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4 Why should I upload my data here?

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4 Why should I upload my data here?

  1. We champion truly shareable data without licensing restrictions - with proper @@ -347,22 +349,31 @@ multiple resources.
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5 Why should I not upload by data here?

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5 Why should I not upload by data here?

-Funny question. There is no good reason not to upload your data here! +Funny question. There are only good reasons to upload your data here +and make it available to the widest audience possible. +

+ +

In fact, you can upload your data here as well as to other resources. It is your data after all. No one can prevent you from -uploading your data to multiple resources. We recommend uploading to -EBI and NCBI resources. Use our data conversion tools to only enter -data once and make the process smooth. +uploading your data to multiple resources. +

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+We recommend uploading to EBI and NCBI resources using our data +conversion tools. It means you only enter data once and make the +process smooth. You can also use our command line data uploader +for bulk uploads!

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6 How does the public sequence resource work?

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6 How does the public sequence resource work?

On uploading a sequence with metadata it will automatically be @@ -373,8 +384,8 @@ using workflows from the High Performance Open Biology Lab defined

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7 Is this about open data?

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7 Is this about open data?

All data is published under a Creative Commons 4.0 attribution license @@ -384,8 +395,8 @@ data and store it for further processing.

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8 Is this about free software?

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8 Is this about free software?

Absolutely. Free software allows for fully reproducible pipelines. You @@ -394,8 +405,8 @@ can take our workflows and data and run it elsewhere!

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9 How do I upload raw data?

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9 How do I upload raw data?

We are preparing raw sequence data pipelines (fastq and BAM). The @@ -410,8 +421,8 @@ assembly variations into consideration. This is all work in progress.

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10 How do I change metadata?

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10 How do I change metadata?

See the http://covid19.genenetwork.org/blog! @@ -419,8 +430,8 @@ See the http://covid19.genenetwork

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11 How do I change the work flows?

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12 How do I change the source code?

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12 How do I change the source code?

Go to our source code repositories, fork/clone the repository, change @@ -439,10 +450,27 @@ many PRs we already merged.

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13 How do I deal with private data and privacy?

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13 Should I choose CC-BY or CC0?

+Restrictive data licenses are hampering data sharing and reproducible +research. CC0 is the preferred license because it gives researchers +the most freedom. Since we provide metadata there is no reason for +others not to honour your work. We also provide CC-BY as an option +because we know people like the attribution clause. +

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+In all honesty: we prefer both data and software to be free. +

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14 How do I deal with private data and privacy?

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A public sequence resource is about public data. Metadata can refer to private data. You can use your own (anonymous) identifiers. We also plan to combine identifiers with clinical data stored securely at @@ -451,9 +479,18 @@ plan to combine identifiers with clinical data stored securely at

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14 Who are the sponsors?

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15 How do I communicate with you?

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+We use a gitter channel you can join. +

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16 Who are the sponsors?

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The main sponsors are listed in the footer. In addition to the time generously donated by many contributors we also acknowledge Amazon AWS @@ -463,7 +500,7 @@ for donating COVID-19 related compute time.

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Created by Pjotr Prins (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!
Modified 2020-05-24 Sun 11:24. +
Created by Pjotr Prins (pjotr.public768 at thebird 'dot' nl) using Emacs org-mode and a healthy dose of Lisp!
Modified 2020-05-27 Wed 07:08.
diff --git a/doc/web/about.org b/doc/web/about.org index f343eb2..bb49c2a 100644 --- a/doc/web/about.org +++ b/doc/web/about.org @@ -14,7 +14,9 @@ - [[#how-do-i-change-metadata][How do I change metadata?]] - [[#how-do-i-change-the-work-flows][How do I change the work flows?]] - [[#how-do-i-change-the-source-code][How do I change the source code?]] + - [[#should-i-choose-cc-by-or-cc0][Should I choose CC-BY or CC0?]] - [[#how-do-i-deal-with-private-data-and-privacy][How do I deal with private data and privacy?]] + - [[#how-do-i-communicate-with-you][How do I communicate with you?]] - [[#who-are-the-sponsors][Who are the sponsors?]] * What is the 'public sequence resource' about? @@ -130,6 +132,16 @@ Go to our [[https://github.com/arvados/bh20-seq-resource][source code repositori something and submit a [[https://github.com/arvados/bh20-seq-resource/pulls][pull request]] (PR). That easy! Check out how many PRs we already merged. +* Should I choose CC-BY or CC0? + +Restrictive data licenses are hampering data sharing and reproducible +research. CC0 is the preferred license because it gives researchers +the most freedom. Since we provide metadata there is no reason for +others not to honour your work. We also provide CC-BY as an option +because we know people like the attribution clause. + +In all honesty: we prefer both data and software to be free. + * How do I deal with private data and privacy? A public sequence resource is about public data. Metadata can refer to @@ -137,6 +149,10 @@ private data. You can use your own (anonymous) identifiers. We also plan to combine identifiers with clinical data stored securely at [[https://redcap-covid19.elixir-luxembourg.org/redcap/][REDCap]]. See the relevant [[https://github.com/arvados/bh20-seq-resource/issues/21][tracker]] for more information and contributing. +* How do I communicate with you? + +We use a [[https://gitter.im/arvados/pubseq?utm_source=share-link&utm_medium=link&utm_campaign=share-link][gitter channel]] you can join. + * Who are the sponsors? The main sponsors are listed in the footer. In addition to the time -- cgit v1.2.3