From ca7df27a6349e7b7009e1d1d5fec372106a072b1 Mon Sep 17 00:00:00 2001
From: Michael R. Crusoe
Date: Tue, 5 May 2020 18:24:56 +0200
Subject: preserve the directory layout of segmentation.py

---
 workflows/pangenome-generate/pangenome-generate.cwl | 2 +-
 workflows/tools                                     | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/workflows/pangenome-generate/pangenome-generate.cwl b/workflows/pangenome-generate/pangenome-generate.cwl
index 51ea6b4..1d49904 100644
--- a/workflows/pangenome-generate/pangenome-generate.cwl
+++ b/workflows/pangenome-generate/pangenome-generate.cwl
@@ -40,7 +40,7 @@ outputs:
     type: File
     outputSource: index_paths/indexed_paths
   colinear_components:
-    type: File[]
+    type: Directory
     outputSource: segment_components/colinear_components
 steps:
   relabel:
diff --git a/workflows/tools b/workflows/tools
index 2d8523e..659e174 160000
--- a/workflows/tools
+++ b/workflows/tools
@@ -1 +1 @@
-Subproject commit 2d8523e9a86a9504e77d21f8a878d4f8ef2dac42
+Subproject commit 659e174d0d42ed6b9afd79d9e6f68e225c526d1e
-- 
cgit v1.2.3