From b67df8c01c7051a5faf65928cbdb93815fd14a9f Mon Sep 17 00:00:00 2001 From: lltommy Date: Wed, 8 Jul 2020 23:50:36 +0200 Subject: Try to fix lab_address wrong predicate, fix submitter shape on the way and hopefully brought it in synch with the yaml --- bh20sequploader/bh20seq-schema.yml | 6 +++--- bh20sequploader/bh20seq-shex.rdf | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/bh20sequploader/bh20seq-schema.yml b/bh20sequploader/bh20seq-schema.yml index 19c794a..a8ab920 100644 --- a/bh20sequploader/bh20seq-schema.yml +++ b/bh20sequploader/bh20seq-schema.yml @@ -197,15 +197,15 @@ $graph: doc: Address of the laboratory where the sample was taken type: string? jsonldPredicate: - _id: http://purl.obolibrary.org/obo/OBI_0600047 + _id: http://purl.obolibrary.org/obo/NCIT_C37900 provider_sample_id: type: string? jsonldPredicate: - _id: http://purl.obolibrary.org/obo/NCIT_C37900 + _id: http://www.ebi.ac.uk/efo/EFO_0001741 submitter_sample_id: type: string? jsonldPredicate: - _id: http://www.ebi.ac.uk/efo/EFO_0001741 + _id: http://purl.obolibrary.org/obo/NCIT_C42781 publication: doc: Reference to publication of this sample (e.g. DOI, pubmed ID, ...) type: string? diff --git a/bh20sequploader/bh20seq-shex.rdf b/bh20sequploader/bh20seq-shex.rdf index 6b196bd..965229c 100644 --- a/bh20sequploader/bh20seq-shex.rdf +++ b/bh20sequploader/bh20seq-shex.rdf @@ -47,9 +47,9 @@ PREFIX wikidata: sio:SIO_000116 xsd:string *; sio:SIO_000172 xsd:string ?; obo:NCIT_C37984 xsd:string ?; - obo:OBI_0600047 xsd:string ?; obo:NCIT_C37900 xsd:string ?; efo:EFO_0001741 xsd:string ?; + obo:NCIT_C42781 xsd:string ?; obo:NCIT_C19026 xsd:string ?; sio:SIO_000115 /https:\u002F\u002Forcid.org\u002F.{4}-.{4}-.{4}-.{4}/ {0,10}; sio:SIO_001167 xsd:string ?; -- cgit v1.2.3