From 9c9512a7e040f8247d259bdc6f9cf55d5d276baf Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Wed, 15 Jul 2020 12:48:12 +0100
Subject: Load metadata locally without pkg_resources

---
 bh20simplewebuploader/main.py            |  9 +++++++--
 bh20simplewebuploader/static/main.js     |  2 +-
 doc/blog/using-covid-19-pubseq-part5.org | 14 +++++++++++---
 3 files changed, 19 insertions(+), 6 deletions(-)

diff --git a/bh20simplewebuploader/main.py b/bh20simplewebuploader/main.py
index 77e345b..8b5781a 100644
--- a/bh20simplewebuploader/main.py
+++ b/bh20simplewebuploader/main.py
@@ -227,8 +227,13 @@ def generate_form(schema, options):
 
 
 # At startup, we need to load the metadata schema from the uploader module, so we can make a form for it
-METADATA_SCHEMA = yaml.safe_load(pkg_resources.resource_stream("bh20sequploader", "bh20seq-schema.yml"))
-METADATA_OPTION_DEFINITIONS = yaml.safe_load(pkg_resources.resource_stream("bh20sequploader", "bh20seq-options.yml"))
+if os.path.isfile("bh20sequploader/bh20seq-schema.yml"):
+    METADATA_SCHEMA = yaml.safe_load(open("bh20sequploader/bh20seq-schema.yml","r").read())
+    METADATA_OPTION_DEFINITIONS = yaml.safe_load(open("bh20sequploader/bh20seq-options.yml","r").read())
+else:
+    METADATA_SCHEMA = yaml.safe_load(pkg_resources.resource_stream("bh20sequploader", "bh20seq-schema.yml"))
+    METADATA_OPTION_DEFINITIONS = yaml.safe_load(pkg_resources.resource_stream("bh20sequploader", "bh20seq-options.yml"))
+print(METADATA_SCHEMA,file=sys.stderr)
 FORM_ITEMS = generate_form(METADATA_SCHEMA, METADATA_OPTION_DEFINITIONS)
 
 @app.route('/')
diff --git a/bh20simplewebuploader/static/main.js b/bh20simplewebuploader/static/main.js
index 751e478..4703047 100644
--- a/bh20simplewebuploader/static/main.js
+++ b/bh20simplewebuploader/static/main.js
@@ -195,7 +195,7 @@ function addField(e) {
   // Increment the number and use the keypath and number to set IDs and cross
   // references.
   // TODO: Heavily dependent on the form field HTML. Maybe we want custom
-  // elements for the labeled controlsd that know how to be list items?
+  // elements for the labeled controls that know how to be list items?
   fieldNumber++
   newField.dataset.number = fieldNumber
   let newID = keypath + '[' + fieldNumber + ']'
diff --git a/doc/blog/using-covid-19-pubseq-part5.org b/doc/blog/using-covid-19-pubseq-part5.org
index 4b0ea64..aa06d5e 100644
--- a/doc/blog/using-covid-19-pubseq-part5.org
+++ b/doc/blog/using-covid-19-pubseq-part5.org
@@ -13,6 +13,7 @@
  - [[#what-is-the-schema][What is the schema?]]
  - [[#how-is-the-website-generated][How is the website generated?]]
  - [[#modifying-the-schema][Modifying the schema]]
+ - [[#adding-fields-to-the-form][Adding fields to the form]]
 
 * Modify Metadata
 
@@ -113,8 +114,15 @@ So, we'll add it simply as a title field. Now the draft schema is
           _id: https://creativecommons.org/ns#Work
 #+END_SRC
 
-Now, we are no ontology experts, right? So, next we submit a patch to our source tree and
-ask for feedback before wiring it up in the data entry form. The pull request was
-submitted here FIXME.
+Now, we are no ontology experts, right? So, next we submit a patch to
+our source tree and ask for feedback before wiring it up in the data
+entry form. The pull request was submitted [[https://github.com/arvados/bh20-seq-resource/pull/97][here]] and reviewed on the
+gitter channel and I merged it.
+
+* Adding fields to the form
+
+To add the new fields to the form we have to modify it a little. If we
+go to the upload form we need to add the license box. The schema is
+loaded in [[https://github.com/arvados/bh20-seq-resource/blob/a0c8ebd57b875f265e8b0efec4abfaf892eb6c45/bh20simplewebuploader/main.py#L229][main.py]] in the 'generate_form' function.
 
 /Note: work in progress/
-- 
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