From 96e7935a658f596f600011888b9eb9efe93973b8 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 4 Nov 2020 06:26:21 -0600 Subject: Test data set --- test/data/test.ttl | 3023 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 3023 insertions(+) create mode 100644 test/data/test.ttl diff --git a/test/data/test.ttl b/test/data/test.ttl new file mode 100644 index 0000000..ddca016 --- /dev/null +++ b/test/data/test.ttl @@ -0,0 +1,3023 @@ + "MT642388.1" . +_:N1439b1d6d2d94e87933fa8e291ef424c "Pelle,B." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Sibley,T.R." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Gautom,R." . +_:N4a8cabe36a4a4b889237bf50672afdc5 "SARS-CoV-2/human/USA/WA-S1134/2020" . +_:N1439b1d6d2d94e87933fa8e291ef424c "Hiatt,B." . +_:N95c93ea1ad6e466a923c5224615af9cd . +_:N1439b1d6d2d94e87933fa8e291ef424c "Thompson,M." . + _:N1439b1d6d2d94e87933fa8e291ef424c . +_:N1439b1d6d2d94e87933fa8e291ef424c "Starita,L.M." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Brandstetter,E." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Englund,J.A." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Han,P.D." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Frazar,C.D." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Shendure,J." . +_:N10d858ad0a8f428b99e9d50e44534232 . +_:N1439b1d6d2d94e87933fa8e291ef424c "Adler,A." . +_:N95c93ea1ad6e466a923c5224615af9cd "2020-05-04" . +_:N1439b1d6d2d94e87933fa8e291ef424c "Bedford,T." . +_:N95c93ea1ad6e466a923c5224615af9cd . +_:N1439b1d6d2d94e87933fa8e291ef424c "Boeckh,M." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Fay,K." . +_:N95c93ea1ad6e466a923c5224615af9cd . +_:N1439b1d6d2d94e87933fa8e291ef424c "Lee,J." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . + _:N10d858ad0a8f428b99e9d50e44534232 . +_:N1439b1d6d2d94e87933fa8e291ef424c "Ilcisin,M." . +_:Naf3e36eba6f649e598a4cdae5798c5f9 . +_:N1439b1d6d2d94e87933fa8e291ef424c "Richardson,M." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Truong,M." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Lutz,B.R." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Wolf,C.R." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Rieder,M.J." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Nickerson,D.A." . +_:N95c93ea1ad6e466a923c5224615af9cd "MT642388.1" . +_:N1439b1d6d2d94e87933fa8e291ef424c "Chu,H.Y." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Famulare,M." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Lindquist,S." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Melly,G." . +_:N1439b1d6d2d94e87933fa8e291ef424c "Dykema,P." . + _:N95c93ea1ad6e466a923c5224615af9cd . +_:N4a8cabe36a4a4b889237bf50672afdc5 . +_:N1439b1d6d2d94e87933fa8e291ef424c "University of Washington Medical Center" . +_:N10d858ad0a8f428b99e9d50e44534232 "https://github.com/seattleflu/assembly v. June-2020" . +_:N1439b1d6d2d94e87933fa8e291ef424c "Lacombe,K." . + _:N4a8cabe36a4a4b889237bf50672afdc5 . + _:Naf3e36eba6f649e598a4cdae5798c5f9 . + + "MT482110.1" . +_:Nc4ef01f9f2db4f38a8684cb25da245b4 "Fink,L." . + _:Nad39d44e054e467c8193bd138e266f8f . +_:Nad39d44e054e467c8193bd138e266f8f . + _:Ne8e1bc331b124c99a63cfec3382c304a . +_:Nc4ef01f9f2db4f38a8684cb25da245b4 "Department of General Services" . +_:Nc4ef01f9f2db4f38a8684cb25da245b4 "Division of Consolidated Laboratory Services, 600 N 5th Street, Richmond, VA 23219, USA" . +_:Nc093e709d69e4d4ca70c21994f4daa07 "The 'collection_date' is estimated (the original date was: 2020-04)" . +_:Nc093e709d69e4d4ca70c21994f4daa07 "2020-04-15" . +_:N236dabd521664cf7982c44322e2b62a5 . +_:N236dabd521664cf7982c44322e2b62a5 "SARS-CoV-2/human/USA/VA-DCLS-0118/2020" . +_:Ne8e1bc331b124c99a63cfec3382c304a "minimap2 v. 2.17; ivar v. 1.1" . +_:Ne8e1bc331b124c99a63cfec3382c304a . +_:Nc093e709d69e4d4ca70c21994f4daa07 "MT482110.1" . 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+_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Joshi,C." . + _:N2466956e91c54b7680c573c4d08c3b03 . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Savaliya,N." . +_:N2466956e91c54b7680c573c4d08c3b03 . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kumar,R." . +_:N34020c72a9b14ee4b55805531b479208 "MT560682.1" . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,Z." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kumar,D." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Vaghela,D." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Dixit,R.D." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,F." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Shah,T." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Trivedi,P." . + _:N2fb31f9e6f9b430aabb169df8ef1ff0e . +_:N34020c72a9b14ee4b55805531b479208 "2020-05-24" . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Hinsu,A." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Sabara,P." . + _:N5812ea42f76e46a3b2d5c9133a932584 . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kanani,A." . + _:N34020c72a9b14ee4b55805531b479208 . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,R." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Bagatharia,S." . +_:N34020c72a9b14ee4b55805531b479208 . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Raval,J." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Pandya,M." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Puvar,A." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Kadri,A.M." . +_:N34020c72a9b14ee4b55805531b479208 . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Joshi,M." . +_:N2fb31f9e6f9b430aabb169df8ef1ff0e "Patel,N." . + + "MT847228.1" . +_:Nd312587dd3214391b72df9c9a60a0792 "Goswami,B." . +_:Nd312587dd3214391b72df9c9a60a0792 "Osman,E." . + _:Nd312587dd3214391b72df9c9a60a0792 . +_:Nb4da79126b0f456db9da92b25ee0bf72 . + _:N200bc8dce3a748278a48f6ba680dd505 . +_:Nd312587dd3214391b72df9c9a60a0792 "Ray,U.C." . +_:Nb4da79126b0f456db9da92b25ee0bf72 . + _:Nc04427fe5513443188e6135c60611ac5 . +_:Nec6c98ce745245af95ed49aebf4e03cb . +_:Nd312587dd3214391b72df9c9a60a0792 "Al Din,S.M.S." . + _:Nec6c98ce745245af95ed49aebf4e03cb . +_:Nc04427fe5513443188e6135c60611ac5 "SARS-CoV-2/human/BGD/BCSIR_NILMRC_321/2020" . +_:Nd312587dd3214391b72df9c9a60a0792 "Yeasmin,M." . +_:Nd312587dd3214391b72df9c9a60a0792 "Uzzaman,M.S." . +_:Nd312587dd3214391b72df9c9a60a0792 "Khan,M.S." . +_:N200bc8dce3a748278a48f6ba680dd505 "DRAGEN RNA Pathogen Detection v. 3.5.14" . +_:Nd312587dd3214391b72df9c9a60a0792 "Sarkar,M.M.H." . +_:Nd312587dd3214391b72df9c9a60a0792 "Ghosh,A.K." . +_:Nd312587dd3214391b72df9c9a60a0792 "Molla,M.M.A." . +_:Nb4da79126b0f456db9da92b25ee0bf72 "MT847228.1" . +_:Nb4da79126b0f456db9da92b25ee0bf72 . +_:Nd312587dd3214391b72df9c9a60a0792 "Jahan,I." . +_:Nd312587dd3214391b72df9c9a60a0792 "Mohammad Mahmud,A.S." . +_:Nd312587dd3214391b72df9c9a60a0792 "Banu,T.A." . +_:Nd312587dd3214391b72df9c9a60a0792 "Shamsuzzaman,A." . +_:Nd312587dd3214391b72df9c9a60a0792 "Hossain,M.S." . +_:N200bc8dce3a748278a48f6ba680dd505 . +_:Nd312587dd3214391b72df9c9a60a0792 "Habib,M.A." . +_:Nb4da79126b0f456db9da92b25ee0bf72 "2020-05-31" . +_:Nd312587dd3214391b72df9c9a60a0792 "Akter,S." . +_:Nd312587dd3214391b72df9c9a60a0792 "Sajib,S.A." . +_:Nd312587dd3214391b72df9c9a60a0792 "Taznin,T." . +_:Nd312587dd3214391b72df9c9a60a0792 "Nafisa,T." . +_:Nc04427fe5513443188e6135c60611ac5 . + _:Nb4da79126b0f456db9da92b25ee0bf72 . + + "MT627413.1" . + _:Ncbc0cb1b37df4769a323c7cfcefe8a30 . +_:Ne1ad6113f259457fbdbca6ee64f5be4d "Quest Diagnostics, 33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA" . +_:Ne1ad6113f259457fbdbca6ee64f5be4d "Infectious Diseases" . + _:Ne1ad6113f259457fbdbca6ee64f5be4d . +_:Ne1ad6113f259457fbdbca6ee64f5be4d "Owen,R." . +_:N92663ac5c0354752a43308c28b52bc06 "SARS-CoV-2/human/USA/CA-QDX-86/2020" . +_:Ne1ad6113f259457fbdbca6ee64f5be4d "Kagan,R.M." . +_:Ncbc0cb1b37df4769a323c7cfcefe8a30 . +_:N9741133ed6a5454aaaae8ada9af2ef17 . + _:N92663ac5c0354752a43308c28b52bc06 . + _:Nbb1a6d737cd84f23bb17be65be1148c9 . +_:Nbb1a6d737cd84f23bb17be65be1148c9 "bwa v. 0.7.17-r1188; iVar v. 1.2.2" . +_:Nbb1a6d737cd84f23bb17be65be1148c9 . +_:N9741133ed6a5454aaaae8ada9af2ef17 "Quest Diagnostics" . +_:N9741133ed6a5454aaaae8ada9af2ef17 "MT627413.1" . +_:Ne1ad6113f259457fbdbca6ee64f5be4d "Rosenthal,S.H." . +_:Ne1ad6113f259457fbdbca6ee64f5be4d "Anderson,B.P." . +_:N92663ac5c0354752a43308c28b52bc06 . +_:N9741133ed6a5454aaaae8ada9af2ef17 . +_:N9741133ed6a5454aaaae8ada9af2ef17 "2020-03-13" . + _:N9741133ed6a5454aaaae8ada9af2ef17 . + + "MT778827.1" . +_:N3e88377e21dc4328bad3aefa9b0080ff "MT778827.1" . +_:Nbc5bc4f0a21840e3a5eae2bd588ca845 . +_:N5dfeb7229c6040f39d4e3a99d6fb18e1 "SARS-CoV-2/human/USA/COVID20-0074/2020" . + _:Nb7f146d920f44c5ca70a1afa83f006d1 . +_:N4f59dc9db9a44abc86894e2590440815 "DRAGEN v. 3.5.13" . +_:Nb7f146d920f44c5ca70a1afa83f006d1 "Flores,H." . +_:N4f59dc9db9a44abc86894e2590440815 . + _:N3e88377e21dc4328bad3aefa9b0080ff . + _:N4f59dc9db9a44abc86894e2590440815 . +_:N3e88377e21dc4328bad3aefa9b0080ff . +_:N3e88377e21dc4328bad3aefa9b0080ff . + _:N5dfeb7229c6040f39d4e3a99d6fb18e1 . +_:N3e88377e21dc4328bad3aefa9b0080ff "2020-04-01" . +_:N3e88377e21dc4328bad3aefa9b0080ff . + _:Nbc5bc4f0a21840e3a5eae2bd588ca845 . +_:N5dfeb7229c6040f39d4e3a99d6fb18e1 . + + "MT528615.1" . + _:N9da18c275e5e471d973a18a5bad843a9 . +_:Nd9fa9c93f7f74c99be10006f7434dace "Dittmer,D." . +_:N96700c35856842769c061b51eeaa1ace . +_:Nd9fa9c93f7f74c99be10006f7434dace "McNamara,R.P." . +_:N2a894f6c57074c2ba5dbec90b70cc589 "2020-04-15" . +_:N45aa5cf8f47243638dc8fb094cd492e5 . + _:N2a894f6c57074c2ba5dbec90b70cc589 . +_:N9da18c275e5e471d973a18a5bad843a9 . +_:Nd9fa9c93f7f74c99be10006f7434dace "Bailey,A.G." . + _:N96700c35856842769c061b51eeaa1ace . +_:Nd9fa9c93f7f74c99be10006f7434dace "Seltzer,T.A." . + _:N45aa5cf8f47243638dc8fb094cd492e5 . +_:Nd9fa9c93f7f74c99be10006f7434dace "Villamor,F." . +_:N2a894f6c57074c2ba5dbec90b70cc589 "MT528615.1" . +_:Nd9fa9c93f7f74c99be10006f7434dace "Vahrson,W." . +_:N2a894f6c57074c2ba5dbec90b70cc589 . +_:N2a894f6c57074c2ba5dbec90b70cc589 "The 'collection_date' is estimated (the original date was: 2020-04)" . +_:Nd9fa9c93f7f74c99be10006f7434dace "Pluta,L.J." . +_:Nd9fa9c93f7f74c99be10006f7434dace "Eason,A.B." . +_:Nd9fa9c93f7f74c99be10006f7434dace "University of North Carolina, 450 West Drive, Chapel Hill, NC 27514, USA" . +_:Nd9fa9c93f7f74c99be10006f7434dace "Moorad,R." . +_:Nd9fa9c93f7f74c99be10006f7434dace "Microbiology & Immunology" . +_:N2a894f6c57074c2ba5dbec90b70cc589 . + _:Nd9fa9c93f7f74c99be10006f7434dace . +_:Nd9fa9c93f7f74c99be10006f7434dace "Landis,J.T." . +_:N9da18c275e5e471d973a18a5bad843a9 "SARS-CoV-2/human/USA/UNC_200290/2020" . +_:Nd9fa9c93f7f74c99be10006f7434dace "Thompson,C." . +_:N2a894f6c57074c2ba5dbec90b70cc589 "Dirk Dittmer" . +_:Nd9fa9c93f7f74c99be10006f7434dace "Juarez,A." . +_:N45aa5cf8f47243638dc8fb094cd492e5 "CLC Genomics Workbench v. 20" . +_:Nd9fa9c93f7f74c99be10006f7434dace "Miller,M.B." . +_:N2a894f6c57074c2ba5dbec90b70cc589 . +_:Nd9fa9c93f7f74c99be10006f7434dace "Caro-Vegas,C.P." . + + "MT539163.1" . 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+_:N58f99d1b04bb4647b0b88be9bf8d6076 . + + "MT612155.1" . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Zhang,J." . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Weiner,Z." . +_:N6c5d0ef0f7094795869f783128dc9349 "2020-04-27" . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Uehara,A." . +_:N6c5d0ef0f7094795869f783128dc9349 "MT533203.1" . +_:N4665f16ca7c6424eaf6e6615c3bb1d1c . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Li,Y." . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Centers for Disease Control and Prevention, 1600 Clifton Rd, Atlanta, GA 30329, USA" . + _:N315687d977ca463cb52aa51f5eb2222e . +_:N6c5d0ef0f7094795869f783128dc9349 . + _:N4665f16ca7c6424eaf6e6615c3bb1d1c . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Tong,S." . +_:N4665f16ca7c6424eaf6e6615c3bb1d1c "SARS-CoV-2/human/USA/VI-CDC-4399/2020" . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Tao,Y." . +_:N8ddcbe4b03c24d0ba4488b4124982f55 "Respiratory Viruses Branch" . +_:N315687d977ca463cb52aa51f5eb2222e "minimap v. 2.17" . + _:Nc6d7f0427cfb402b8bfd90925059a1df . 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"Sibley,T.R." . +_:Nda00569dc1d0435dac955e3e663b779c . +_:Ne29b5bb87ccc4d59896664810fab8493 "Englund,J.A." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Wolf,C.R." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Famulare,M." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Rieder,M.J." . +_:N3c87f171b9c842dfb1280f61b56ea56c . +_:Ne29b5bb87ccc4d59896664810fab8493 "Lee,J." . +_:N65ec013122194bc8ad1d47789fda0c1e "2020-04-23" . +_:Ne29b5bb87ccc4d59896664810fab8493 "Fay,K." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Chu,H.Y." . + _:Nda00569dc1d0435dac955e3e663b779c . +_:Ne29b5bb87ccc4d59896664810fab8493 "Richardson,M." . +_:N3c87f171b9c842dfb1280f61b56ea56c "SARS-CoV-2/human/USA/WA-S614/2020" . +_:Ne29b5bb87ccc4d59896664810fab8493 "Pelle,B." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Han,P.D." . +_:N330da8ba561446e8b1eac17771d3b958 . +_:N65ec013122194bc8ad1d47789fda0c1e . +_:Ne29b5bb87ccc4d59896664810fab8493 "Truong,M." . +_:N65ec013122194bc8ad1d47789fda0c1e "MT627922.1" . +_:N65ec013122194bc8ad1d47789fda0c1e . 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May-2020" . +_:Ne29b5bb87ccc4d59896664810fab8493 "Frazar,C.D." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Brandstetter,E." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Ilcisin,M." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Lutz,B.R." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Adler,A." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Bedford,T." . +_:Ne29b5bb87ccc4d59896664810fab8493 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . +_:Ne29b5bb87ccc4d59896664810fab8493 "Nickerson,D.A." . + _:N3c87f171b9c842dfb1280f61b56ea56c . + + "MT451089.1" . + _:N78d7fa56355246d785c69ac7ca8af6db . +_:Nbef4116f545a4ea081bfee8447506a05 "Schultz,M.B." . +_:Nbef4116f545a4ea081bfee8447506a05 "Barreto,I." . +_:N4f2a46242e454dd08dfaa10ff41375c1 "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . +_:Nbef4116f545a4ea081bfee8447506a05 "Wapling,J." . +_:Nbef4116f545a4ea081bfee8447506a05 "Meumann,E." . +_:N4f2a46242e454dd08dfaa10ff41375c1 . +_:Nbef4116f545a4ea081bfee8447506a05 "Salles de Sousa,A." . +_:N496bf7b170984543af841b12c9c5e1ab . +_:Nbef4116f545a4ea081bfee8447506a05 "Dakh,F." . +_:N4f2a46242e454dd08dfaa10ff41375c1 "MT612196.1" . +_:N496bf7b170984543af841b12c9c5e1ab "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . +_:Nbef4116f545a4ea081bfee8447506a05 "Soares da Silva,E." . +_:Nbef4116f545a4ea081bfee8447506a05 "Baird,R." . +_:Nbef4116f545a4ea081bfee8447506a05 "Canisia,D." . +_:Nbef4116f545a4ea081bfee8447506a05 "Jayanti Pereira Tilman,A." . +_:N78d7fa56355246d785c69ac7ca8af6db . + _:Nbef4116f545a4ea081bfee8447506a05 . +_:N4f2a46242e454dd08dfaa10ff41375c1 "2020-01-15" . +_:N50d446de6229429385b36b4c230ff3ab "SARS-CoV-2/human/AUS/VIC1586/2020" . +_:N4f2a46242e454dd08dfaa10ff41375c1 "The 'collection_date' is estimated (the original date was: 2020)" . + _:N4f2a46242e454dd08dfaa10ff41375c1 . +_:Nbef4116f545a4ea081bfee8447506a05 "Sherry,N." . +_:Nbef4116f545a4ea081bfee8447506a05 "Seemann,T." . +_:Nbef4116f545a4ea081bfee8447506a05 "Douglas,N." . +_:Nbef4116f545a4ea081bfee8447506a05 "Marr,I." . +_:N4f2a46242e454dd08dfaa10ff41375c1 . +_:Nbef4116f545a4ea081bfee8447506a05 "Freeman,K." . + _:N496bf7b170984543af841b12c9c5e1ab . +_:N50d446de6229429385b36b4c230ff3ab . +_:Nbef4116f545a4ea081bfee8447506a05 "Dolores de Jesus da Costa,M." . +_:Nbef4116f545a4ea081bfee8447506a05 "Druce,J." . +_:Nbef4116f545a4ea081bfee8447506a05 "Caly,L." . +_:Nbef4116f545a4ea081bfee8447506a05 "Ximenes,J." . + _:N50d446de6229429385b36b4c230ff3ab . +_:Nbef4116f545a4ea081bfee8447506a05 "Francis,J." . +_:Nbef4116f545a4ea081bfee8447506a05 "Sait,M." . +_:Nbef4116f545a4ea081bfee8447506a05 "Antonia da Costa,E." . + + "MT614533.1" . +_:N493bb03f03284611b62478d7ca662abf "2020-03-14" . +_:Ndb65554053ca4019adcfc3a182f43374 "Rosenthal,S.H." . +_:Nd5d217b483534bcfa78695e2654c919e . +_:Ndb65554053ca4019adcfc3a182f43374 "Quest Diagnostics, 33608 Ortega Hwy, San Juan Capistrano, CA 92675, USA" . +_:Na6be144e6bb34da5b6104af45896fcca . +_:Ndb65554053ca4019adcfc3a182f43374 "Kagan,R.M." . + _:Ndb65554053ca4019adcfc3a182f43374 . +_:N493bb03f03284611b62478d7ca662abf "MT614533.1" . + _:Nd5d217b483534bcfa78695e2654c919e . +_:Nb8544995b5cb4f7893e9d4231df3c0bb "bwa v. 0.7.17-r1188; iVar v. 1.2.2" . +_:N493bb03f03284611b62478d7ca662abf "Quest Diagnostics" . +_:N493bb03f03284611b62478d7ca662abf . +_:Nd5d217b483534bcfa78695e2654c919e "SARS-CoV-2/human/USA/MA-QDX-135/2020" . +_:Ndb65554053ca4019adcfc3a182f43374 "Infectious Diseases" . + _:Nb8544995b5cb4f7893e9d4231df3c0bb . +_:Ndb65554053ca4019adcfc3a182f43374 "Anderson,B.P." . +_:N493bb03f03284611b62478d7ca662abf . + _:Na6be144e6bb34da5b6104af45896fcca . +_:Nb8544995b5cb4f7893e9d4231df3c0bb . + _:N493bb03f03284611b62478d7ca662abf . +_:Ndb65554053ca4019adcfc3a182f43374 "Owen,R." . + + "MT632866.1" . +_:N4d69533932344e408e666fcbaea4e926 "Hiatt,B." . +_:N0ae540a3cdbf4877a9a33311dcbc98c1 . +_:N4d69533932344e408e666fcbaea4e926 "Pelle,B." . +_:N4d69533932344e408e666fcbaea4e926 "Lutz,B.R." . +_:N4d69533932344e408e666fcbaea4e926 "Adler,A." . +_:N4d69533932344e408e666fcbaea4e926 "Sibley,T.R." . +_:N07172617652b4010a300d8f6189a4e4b "https://github.com/seattleflu/assembly v. April-2020" . + _:N0ae540a3cdbf4877a9a33311dcbc98c1 . +_:N4d69533932344e408e666fcbaea4e926 "Boeckh,M." . +_:N4d69533932344e408e666fcbaea4e926 "Bedford,T." . +_:N4d69533932344e408e666fcbaea4e926 "Englund,J.A." . +_:N3225e8d216084677ac6f1a7f40e36a4b . +_:N4d69533932344e408e666fcbaea4e926 "Truong,M." . +_:N4d69533932344e408e666fcbaea4e926 "Starita,L.M." . +_:N4d69533932344e408e666fcbaea4e926 "Nickerson,D.A." . +_:N4d69533932344e408e666fcbaea4e926 "Frazar,C.D." . +_:N4d69533932344e408e666fcbaea4e926 "Thompson,M." . +_:N4d69533932344e408e666fcbaea4e926 "Fay,K." . + _:N3225e8d216084677ac6f1a7f40e36a4b . +_:N4d69533932344e408e666fcbaea4e926 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . + _:N07172617652b4010a300d8f6189a4e4b . +_:N0ae540a3cdbf4877a9a33311dcbc98c1 "MT632866.1" . +_:N4d69533932344e408e666fcbaea4e926 "Han,P.D." . +_:N0ae540a3cdbf4877a9a33311dcbc98c1 . +_:N4d69533932344e408e666fcbaea4e926 "Lindquist,S." . +_:N0ae540a3cdbf4877a9a33311dcbc98c1 "2020-03-31" . +_:N4d69533932344e408e666fcbaea4e926 "Dykema,P." . +_:N83601a52a14a4d9c8fe86afe146aa429 . +_:N4d69533932344e408e666fcbaea4e926 "Wolf,C.R." . +_:N0ae540a3cdbf4877a9a33311dcbc98c1 . + _:N4d69533932344e408e666fcbaea4e926 . +_:N4d69533932344e408e666fcbaea4e926 "University of Washington Medical Center" . +_:N4d69533932344e408e666fcbaea4e926 "Lee,J." . +_:N4d69533932344e408e666fcbaea4e926 "Lacombe,K." . +_:N07172617652b4010a300d8f6189a4e4b . +_:N4d69533932344e408e666fcbaea4e926 "Shendure,J." . + _:N83601a52a14a4d9c8fe86afe146aa429 . +_:N4d69533932344e408e666fcbaea4e926 "Brandstetter,E." . +_:N4d69533932344e408e666fcbaea4e926 "Ilcisin,M." . +_:N4d69533932344e408e666fcbaea4e926 "Rieder,M.J." . +_:N3225e8d216084677ac6f1a7f40e36a4b "SARS-CoV-2/human/USA/WA-S437/2020" . +_:N4d69533932344e408e666fcbaea4e926 "Gautom,R." . +_:N4d69533932344e408e666fcbaea4e926 "Chu,H.Y." . +_:N4d69533932344e408e666fcbaea4e926 "Richardson,M." . +_:N4d69533932344e408e666fcbaea4e926 "Melly,G." . +_:N4d69533932344e408e666fcbaea4e926 "Famulare,M." . + + "MT831299.1" . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Sibley,T.R." . +_:N978c29ad774744b4be1acb2cba5a08e9 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Englund,J.A." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Bedford,T." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Rieder,M.J." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Adler,A." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Melly,G." . +_:N978c29ad774744b4be1acb2cba5a08e9 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Brandstetter,E." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Famulare,M." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Lindquist,S." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Chu,H.Y." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Shendure,J." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Gautom,R." . +_:N0ef43d8f082d49c7bd9ef4156339e1b7 . + _:N2570b060a94f4263aa5ef3699b633fd6 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Richardson,M." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Starita,L.M." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Thompson,M." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Lee,J." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Dykema,P." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Nickerson,D.A." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Han,P.D." . +_:N2570b060a94f4263aa5ef3699b633fd6 "https://github.com/seattleflu/assembly v. July-2020" . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "University of Washington Medical Center" . +_:N978c29ad774744b4be1acb2cba5a08e9 "2020-06-03" . +_:N978c29ad774744b4be1acb2cba5a08e9 "MT831299.1" . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Lacombe,K." . +_:Ne4952d4f167d4185b9c509e31a738068 "SARS-CoV-2/human/USA/WA-S1930/2020" . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Pelle,B." . + _:N16fccc9d21c54d72b9a04f9ec3809e79 . + _:N978c29ad774744b4be1acb2cba5a08e9 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Truong,M." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Ilcisin,M." . +_:Ne4952d4f167d4185b9c509e31a738068 . + _:N0ef43d8f082d49c7bd9ef4156339e1b7 . + _:Ne4952d4f167d4185b9c509e31a738068 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Fay,K." . +_:N2570b060a94f4263aa5ef3699b633fd6 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Hiatt,B." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Lutz,B.R." . +_:N978c29ad774744b4be1acb2cba5a08e9 . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Boeckh,M." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Frazar,C.D." . +_:N16fccc9d21c54d72b9a04f9ec3809e79 "Wolf,C.R." . + + "MT703998.1" . +_:N8439f616f4014b8a824ba04e7f0202eb "Sherry,N." . +_:N8439f616f4014b8a824ba04e7f0202eb "Barreto,I." . +_:N8439f616f4014b8a824ba04e7f0202eb "Seemann,T." . +_:N47b7608803bb4e1191b285b602f3028d "SARS-CoV-2/human/AUS/VIC1292/2020" . + _:Na17b3cc53fbf47368855725ed3e0bab7 . + _:N47b7608803bb4e1191b285b602f3028d . +_:N8439f616f4014b8a824ba04e7f0202eb "Francis,J." . + _:N8439f616f4014b8a824ba04e7f0202eb . +_:Ne5e67d903aa6486780a8a8250551755b "2020-04-09" . +_:N8439f616f4014b8a824ba04e7f0202eb "Ximenes,J." . +_:N8439f616f4014b8a824ba04e7f0202eb "Sait,M." . +_:Ne5e67d903aa6486780a8a8250551755b "MT641735.1" . +_:Na17b3cc53fbf47368855725ed3e0bab7 "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . +_:N8439f616f4014b8a824ba04e7f0202eb "Baird,R." . + _:N30209ff545994d0aad44b511cf775c7f . +_:N8439f616f4014b8a824ba04e7f0202eb "Douglas,N." . +_:N8439f616f4014b8a824ba04e7f0202eb "Meumann,E." . 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_:N0183916916f344809fcd1a9bb40bb111 . + _:N8534fe5c5b2a4c0a8b9a878c8941698d . +_:N9dbdb9fa265048efb9b489be9f07597f "Department of Immunology" . + + "MT520536.1" . +_:N31cf9593eb30401e81751723617d6bb2 "Harris,J." . +_:N31cf9593eb30401e81751723617d6bb2 "Ryan,E." . +_:Na027a59991e741aeabd14d0f73ba89bf . +_:N31cf9593eb30401e81751723617d6bb2 "Lin,A.E." . +_:N31cf9593eb30401e81751723617d6bb2 "Adams,G." . +_:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . +_:N31cf9593eb30401e81751723617d6bb2 "Reilly,S." . +_:N31cf9593eb30401e81751723617d6bb2 "Normandin,E." . +_:N31cf9593eb30401e81751723617d6bb2 "Cerrato,F." . +_:Na027a59991e741aeabd14d0f73ba89bf "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . +_:N31cf9593eb30401e81751723617d6bb2 "Anahtar,M." . +_:N31cf9593eb30401e81751723617d6bb2 "Chapman,S.B." . + _:Na027a59991e741aeabd14d0f73ba89bf . +_:N07b54c5c646d44d9b3d2fd01e208d8d3 "SARS-CoV-2/human/USA/MA_MGH_00295/2020" . 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+_:N31cf9593eb30401e81751723617d6bb2 "MacInnis,B.L." . + _:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . +_:N31cf9593eb30401e81751723617d6bb2 "Siddle,K.J." . +_:N31cf9593eb30401e81751723617d6bb2 "Loreth,C." . +_:N31cf9593eb30401e81751723617d6bb2 "Bauer,M." . +_:N31cf9593eb30401e81751723617d6bb2 "Cusick,C." . +_:N31cf9593eb30401e81751723617d6bb2 "Flowers,K." . +_:N31cf9593eb30401e81751723617d6bb2 "Rosenberg,E." . +_:N31cf9593eb30401e81751723617d6bb2 "Branda,J." . +_:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 . +_:N31cf9593eb30401e81751723617d6bb2 "Rudy,M." . +_:Ne0f8abee8ff94bd0a3d0fa6ddfecbe18 "MT520536.1" . +_:N07b54c5c646d44d9b3d2fd01e208d8d3 . +_:N31cf9593eb30401e81751723617d6bb2 "Pierce,V." . +_:N31cf9593eb30401e81751723617d6bb2 "Birren,B.W." . +_:N31cf9593eb30401e81751723617d6bb2 "Sabeti,P.C." . +_:N31cf9593eb30401e81751723617d6bb2 "Gnirke,A." . + _:N31cf9593eb30401e81751723617d6bb2 . +_:N31cf9593eb30401e81751723617d6bb2 "Gladden-Young,A." . +_:N31cf9593eb30401e81751723617d6bb2 "Chaluvadi,S." . +_:N2c11d73704264b08a30ec6db6d0fcfb5 . + + "MT358690.1" . +_:Nce16f02017da4a1ab32125216a0adfe8 "Nilyanimit,P." . + _:Nce16f02017da4a1ab32125216a0adfe8 . +_:N2598213217ed4f048874d99ca2f40205 . + _:N2983fcaf4d304840b331bc2969d457d3 . +_:Nd57b808d4c994dcfb3c399595e1393e4 "SARS-CoV-2/human/THA/CO63-989/2020" . +_:N2598213217ed4f048874d99ca2f40205 "2020-03-14" . +_:Nd57b808d4c994dcfb3c399595e1393e4 . +_:Nce16f02017da4a1ab32125216a0adfe8 "Suwannakarn,K." . +_:N2598213217ed4f048874d99ca2f40205 "MT503078.1" . + _:Nd57b808d4c994dcfb3c399595e1393e4 . +_:Nce16f02017da4a1ab32125216a0adfe8 "Auphimai,C." . + _:N059189fbc1084aa58d10cb9b03dafd0a . +_:N2598213217ed4f048874d99ca2f40205 . +_:Nce16f02017da4a1ab32125216a0adfe8 "Poovorawan,Y." . +_:N2983fcaf4d304840b331bc2969d457d3 . +_:Nce16f02017da4a1ab32125216a0adfe8 "Puenpa,J." . +_:Nce16f02017da4a1ab32125216a0adfe8 "Yorsaeng,R." . + _:N2598213217ed4f048874d99ca2f40205 . +_:Nce16f02017da4a1ab32125216a0adfe8 "Chansaenroj,J." . +_:N059189fbc1084aa58d10cb9b03dafd0a . + + "SRR11621868" . + _:N7ca35e084c33459987c2e45cb4957af2 . + _:N6e244e9b14904b76b43724754469df1d . +_:N7ca35e084c33459987c2e45cb4957af2 "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . +_:N7ca35e084c33459987c2e45cb4957af2 "Laboratory Medicine" . +_:N174bd4ecd46144d4ac2de8c3d00590f0 "The real 'collection_date' is missing" . +_:N7ca35e084c33459987c2e45cb4957af2 "University of Washington" . +_:N7ca35e084c33459987c2e45cb4957af2 "proychou@uw.edu" . +_:N71ac8fc9b3ed4396832ed7d75c13239e . +_:N6e244e9b14904b76b43724754469df1d . + _:N005bdf78909740bbbbe20483ea5b5b75 . +_:N005bdf78909740bbbbe20483ea5b5b75 . +_:N174bd4ecd46144d4ac2de8c3d00590f0 "University of Washington Virology Lab" . +_:N7ca35e084c33459987c2e45cb4957af2 "Pavitra Roychoudhury" . +_:N7ca35e084c33459987c2e45cb4957af2 "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . +_:N005bdf78909740bbbbe20483ea5b5b75 "LIBRARY_STRATEGY: RNA-Seq;" . +_:N174bd4ecd46144d4ac2de8c3d00590f0 "1970-01-01" . + _:N71ac8fc9b3ed4396832ed7d75c13239e . +_:N174bd4ecd46144d4ac2de8c3d00590f0 . +_:N7ca35e084c33459987c2e45cb4957af2 "PRJNA610428" . +_:N174bd4ecd46144d4ac2de8c3d00590f0 "SRR11621868" . +_:N7ca35e084c33459987c2e45cb4957af2 "SRA1069823" . + _:N174bd4ecd46144d4ac2de8c3d00590f0 . + + "MT517429.1" . + _:N0a9a77c5d734458cb289ea40af51d57d . + _:N7d8bf78f0fb74856bb359b1baccdeba4 . + _:Ndceac3d656b3475896fc89d0cd74a59d . +_:N7d8bf78f0fb74856bb359b1baccdeba4 . +_:N33aad2be007f4d90830c269a63f23483 "SARS-CoV-2/human/CHN/JS(5)/2020" . +_:N0a9a77c5d734458cb289ea40af51d57d . +_:Ndceac3d656b3475896fc89d0cd74a59d "MT415840.1" . +_:Ndceac3d656b3475896fc89d0cd74a59d . +_:Ndceac3d656b3475896fc89d0cd74a59d . + _:N33aad2be007f4d90830c269a63f23483 . +_:N33aad2be007f4d90830c269a63f23483 . +_:Ne3309be4a4134f7795798faaa301a505 "Yan,Y." . 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MAY-2020" . +_:N11fcda39300948d9bcea58357dfdd07f "Petr,K." . +_:N00485b55a1c54cae8c8c174c3e6480c9 . +_:N487735f3df0d45d5bbd6adb9714d85b7 . +_:N487735f3df0d45d5bbd6adb9714d85b7 . + _:N00485b55a1c54cae8c8c174c3e6480c9 . +_:N487735f3df0d45d5bbd6adb9714d85b7 . +_:N11fcda39300948d9bcea58357dfdd07f "Jan,G." . + _:N11fcda39300948d9bcea58357dfdd07f . + _:N487735f3df0d45d5bbd6adb9714d85b7 . +_:N11fcda39300948d9bcea58357dfdd07f "Martin,K." . +_:Nb6c628bc198f45a1b0d805102d8cd1c5 . +_:N11fcda39300948d9bcea58357dfdd07f "Katerina,K." . +_:N487735f3df0d45d5bbd6adb9714d85b7 "MT517423.1" . + _:Nb6c628bc198f45a1b0d805102d8cd1c5 . + + "MT642294.1" . +_:Ncfaa905035a147d7ba322c9f719c011f "SARS-CoV-2/human/USA/WA-S1093/2020" . +_:N4d8208580c77473ba04f8fb683c93d03 "Famulare,M." . +_:N4d8208580c77473ba04f8fb683c93d03 "Chu,H.Y." . +_:N4d8208580c77473ba04f8fb683c93d03 "Hiatt,B." . +_:N5e4f4413cd1144f98823fb0ec22e1591 . +_:N4d8208580c77473ba04f8fb683c93d03 "Lee,J." . +_:N4d8208580c77473ba04f8fb683c93d03 "Bedford,T." . +_:N5ce36be169374d1da7a52f28d3bb43dc "https://github.com/seattleflu/assembly v. June-2020" . +_:N4d8208580c77473ba04f8fb683c93d03 "Pelle,B." . +_:N4d8208580c77473ba04f8fb683c93d03 "Wolf,C.R." . +_:N4d8208580c77473ba04f8fb683c93d03 "Richardson,M." . +_:N4d8208580c77473ba04f8fb683c93d03 "Frazar,C.D." . +_:N4d8208580c77473ba04f8fb683c93d03 "Sibley,T.R." . + _:N354cc798c49849e695c4c456403e6ed1 . +_:N4d8208580c77473ba04f8fb683c93d03 "Truong,M." . +_:N4d8208580c77473ba04f8fb683c93d03 "Adler,A." . +_:N4d8208580c77473ba04f8fb683c93d03 "Nickerson,D.A." . +_:N5e4f4413cd1144f98823fb0ec22e1591 . +_:N4d8208580c77473ba04f8fb683c93d03 "Lindquist,S." . +_:N5ce36be169374d1da7a52f28d3bb43dc . +_:N4d8208580c77473ba04f8fb683c93d03 "Dykema,P." . + _:N4d8208580c77473ba04f8fb683c93d03 . +_:N4d8208580c77473ba04f8fb683c93d03 "Boeckh,M." . +_:N4d8208580c77473ba04f8fb683c93d03 "Han,P.D." . +_:N354cc798c49849e695c4c456403e6ed1 . +_:N4d8208580c77473ba04f8fb683c93d03 "Brandstetter,E." . +_:N4d8208580c77473ba04f8fb683c93d03 "Lutz,B.R." . +_:Ncfaa905035a147d7ba322c9f719c011f . +_:N4d8208580c77473ba04f8fb683c93d03 "Gautom,R." . +_:N4d8208580c77473ba04f8fb683c93d03 "Shendure,J." . +_:N5e4f4413cd1144f98823fb0ec22e1591 "MT642294.1" . + _:Ncfaa905035a147d7ba322c9f719c011f . +_:N4d8208580c77473ba04f8fb683c93d03 "University of Washington Medical Center" . +_:N4d8208580c77473ba04f8fb683c93d03 "Rieder,M.J." . +_:N4d8208580c77473ba04f8fb683c93d03 "Fay,K." . +_:N4d8208580c77473ba04f8fb683c93d03 "Melly,G." . +_:N5e4f4413cd1144f98823fb0ec22e1591 . +_:N4d8208580c77473ba04f8fb683c93d03 "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . +_:N5e4f4413cd1144f98823fb0ec22e1591 "2020-05-02" . +_:N4d8208580c77473ba04f8fb683c93d03 "Englund,J.A." . + _:N5ce36be169374d1da7a52f28d3bb43dc . + _:N5e4f4413cd1144f98823fb0ec22e1591 . +_:N4d8208580c77473ba04f8fb683c93d03 "Thompson,M." . +_:N4d8208580c77473ba04f8fb683c93d03 "Ilcisin,M." . +_:N4d8208580c77473ba04f8fb683c93d03 "Lacombe,K." . +_:N4d8208580c77473ba04f8fb683c93d03 "Starita,L.M." . + + "MT584981.1" . +_:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Bureau of Laboratories - Division Infectious Disease" . +_:N63a1b95b5397478d891c7c5a7f0dfe83 . + _:N63a1b95b5397478d891c7c5a7f0dfe83 . +_:N7b52ea475d714831ae4ab897eced5b1f . +_:N7b52ea475d714831ae4ab897eced5b1f . +_:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Riner,D." . + _:N4fd20d42a15f4ddea8b5dc42e9f9d13b . + _:Ndee23317312d4655be64c47d6164f1f5 . +_:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Blankenship,H.M." . + _:N7b52ea475d714831ae4ab897eced5b1f . +_:N7b52ea475d714831ae4ab897eced5b1f . +_:Ndee23317312d4655be64c47d6164f1f5 . +_:N63a1b95b5397478d891c7c5a7f0dfe83 "bwa v. 0.7.17; bcftools v. 1.7" . +_:N7b52ea475d714831ae4ab897eced5b1f "MT584981.1" . +_:Nb07258d74f244bf0bfda37fbed0240cf . +_:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Soehnlen,M.K." . +_:N7b52ea475d714831ae4ab897eced5b1f "2020-04-15" . +_:N4fd20d42a15f4ddea8b5dc42e9f9d13b "Michigan Department of Health and Human Services, 3350 N Martin Luther King Jr Blvd, Lansing, MI 48906, USA" . +_:Nb07258d74f244bf0bfda37fbed0240cf "SARS-CoV-2/human/USA/MI-MDHHS-SC20621/2020" . + _:Nb07258d74f244bf0bfda37fbed0240cf . + + "MT704113.1" . +_:N677881f4652447eea78e6c65257bf88e "MT704113.1" . +_:N677881f4652447eea78e6c65257bf88e . +_:N5d62526176574d86891ac25913a502bb . +_:N42f975e73d61453c8b0c17d916bba4a8 "BPHL" . + _:N07d004c4f07f4091a78c478d7ab86c9e . +_:N42f975e73d61453c8b0c17d916bba4a8 "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . + _:N5d62526176574d86891ac25913a502bb . +_:N07d004c4f07f4091a78c478d7ab86c9e . +_:N901279ed616a443986be6980f63d2462 . +_:N677881f4652447eea78e6c65257bf88e "2020-05-16" . +_:N07d004c4f07f4091a78c478d7ab86c9e "SARS-CoV-2/human/USA/FL-BPHL-0295/2020" . +_:N42f975e73d61453c8b0c17d916bba4a8 "Blanton,J." . +_:N901279ed616a443986be6980f63d2462 "bwa v. 0.7.17; 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ivar v. 1.2" . +_:Nc917dc1770dc46bd99a71e67a9125019 . +_:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 . +_:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 "2020-04-20" . +_:Nd0a9ef0380ef47c7a8da2d7c0bb1f810 "MT628119.1" . +_:N5545f8fd4703434c9e79ab5f69c75768 . + + "MT612316.1" . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Dakh,F." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Sherry,N." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Meumann,E." . + _:Nfcf6165b70d14992ad7146fca9af72e6 . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Seemann,T." . +_:N2530b6b9ccdf4fd49be4bede05797a6b "SARS-CoV-2/human/AUS/VIC1741/2020" . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Caly,L." . +_:Ndd232481e43844488df78a04ec1ace92 . + _:N7df161bc1c334a0ba0a2c6688eb2726a . +_:Ndd232481e43844488df78a04ec1ace92 . +_:Nb0b3dd5177214de985266f2cadeed7d3 . + _:Nb0b3dd5177214de985266f2cadeed7d3 . +_:Ndd232481e43844488df78a04ec1ace92 "2020-05-23" . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Canisia,D." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Schultz,M.B." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Soares da Silva,E." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Antonia da Costa,E." . +_:N2530b6b9ccdf4fd49be4bede05797a6b . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Marr,I." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Druce,J." . +_:Nfcf6165b70d14992ad7146fca9af72e6 "Wapling,J." . + _:N2530b6b9ccdf4fd49be4bede05797a6b . +_:Nb0b3dd5177214de985266f2cadeed7d3 "minimap2 v. 2.17; 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June-2020" . +_:Ne0dd8240c12f4aab86c645d63b7cd27e . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Gautom,R." . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Lindquist,S." . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Hiatt,B." . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Rieder,M.J." . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Wolf,C.R." . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Pelle,B." . + _:Ne0dd8240c12f4aab86c645d63b7cd27e . +_:Ne98acee8bdc34fafb5878ca25e38d7bd "Lutz,B.R." . + + "MT520375.1" . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Lagerborg,K." . +_:Ndeaa467c11684c6fa23d696818c7aea7 . +_:N93deeea6c02f457f8c178c83ea42c13f "Massachusetts General Hospital" . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Lin,A.E." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Anahtar,M." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Cusick,C." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Reilly,S." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "MacInnis,B.L." . +_:N53b49da76dd24d078856deabd2f85fa7 "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Normandin,E." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Rudy,M." . + _:Nb8d4606544d847208cf75e7d2abd9b8f . +_:N93deeea6c02f457f8c178c83ea42c13f "2020-03-07" . +_:N1b6222cfd6d3462f97be429a67fc5c57 "SARS-CoV-2/human/USA/MA_MGH_00419/2020" . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Flowers,K." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Ryan,E." . +_:N93deeea6c02f457f8c178c83ea42c13f . + _:N93deeea6c02f457f8c178c83ea42c13f . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Gnirke,A." . + _:N1b6222cfd6d3462f97be429a67fc5c57 . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Adams,G." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Pierce,V." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Turbett,S." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "LaRocque,R." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Lemieux,J.E." . +_:N53b49da76dd24d078856deabd2f85fa7 "2331.390748"^^ . +_:N93deeea6c02f457f8c178c83ea42c13f . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Carter,A." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Gallagher,G." . +_:N1b6222cfd6d3462f97be429a67fc5c57 . +_:N93deeea6c02f457f8c178c83ea42c13f . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Sabeti,P.C." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Harris,J." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "DeRuff,K." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Chaluvadi,S." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Smole,S." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Rosenberg,E." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Slater,D." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Branda,J." . +_:N93deeea6c02f457f8c178c83ea42c13f "MT520375.1" . + _:N53b49da76dd24d078856deabd2f85fa7 . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Gladden-Young,A." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Neumann,A." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Bauer,M." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Park,D.J." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Tomkins-Tinch,C." . +_:N53b49da76dd24d078856deabd2f85fa7 . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Siddle,K.J." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Loreth,C." . + _:Ndeaa467c11684c6fa23d696818c7aea7 . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Chapman,S.B." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Shaw,B." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Birren,B.W." . +_:Nb8d4606544d847208cf75e7d2abd9b8f "Cerrato,F." . + + "MT834203.1" . +_:N67175c78c3344ffd923c08139d98402c "Sibley,T.R." . +_:N67175c78c3344ffd923c08139d98402c "Rieder,M.J." . +_:N67175c78c3344ffd923c08139d98402c "Lee,J." . +_:N67175c78c3344ffd923c08139d98402c "Englund,J.A." . +_:N67175c78c3344ffd923c08139d98402c "Lindquist,S." . +_:N67175c78c3344ffd923c08139d98402c "Boeckh,M." . +_:N67175c78c3344ffd923c08139d98402c "Han,P.D." . +_:Nf301e652683d44b18eb59a4519a59ab0 . +_:N67175c78c3344ffd923c08139d98402c "Starita,L.M." . +_:N6903a7261bfd447a988f7c1285ce0c36 "https://github.com/seattleflu/assembly v. June-2020" . +_:N67175c78c3344ffd923c08139d98402c "Wolf,C.R." . +_:N67175c78c3344ffd923c08139d98402c "Chu,H.Y." . + _:N1c8949be1cd346828f52d90ad28b9a05 . +_:N67175c78c3344ffd923c08139d98402c "Thompson,M." . +_:N1c8949be1cd346828f52d90ad28b9a05 "SARS-CoV-2/human/USA/WA-S1610/2020" . +_:N67175c78c3344ffd923c08139d98402c "Richardson,M." . +_:N67175c78c3344ffd923c08139d98402c "Fay,K." . +_:N67175c78c3344ffd923c08139d98402c "Brandstetter,E." . +_:N67175c78c3344ffd923c08139d98402c "Bedford,T." . +_:N4719715d02f744f1898ea574c29f29a4 . +_:N67175c78c3344ffd923c08139d98402c "University of Washington Medical Center" . +_:N67175c78c3344ffd923c08139d98402c "Truong,M." . +_:N4719715d02f744f1898ea574c29f29a4 . +_:N67175c78c3344ffd923c08139d98402c "Hiatt,B." . +_:N4719715d02f744f1898ea574c29f29a4 . +_:N67175c78c3344ffd923c08139d98402c "Nickerson,D.A." . +_:N67175c78c3344ffd923c08139d98402c "Ilcisin,M." . +_:N67175c78c3344ffd923c08139d98402c "Dykema,P." . + _:N6903a7261bfd447a988f7c1285ce0c36 . +_:N67175c78c3344ffd923c08139d98402c "Lutz,B.R." . +_:N67175c78c3344ffd923c08139d98402c "Shendure,J." . +_:N67175c78c3344ffd923c08139d98402c "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . +_:N4719715d02f744f1898ea574c29f29a4 "2020-05-26" . +_:N67175c78c3344ffd923c08139d98402c "Frazar,C.D." . +_:N4719715d02f744f1898ea574c29f29a4 "MT834203.1" . + _:N67175c78c3344ffd923c08139d98402c . +_:N67175c78c3344ffd923c08139d98402c "Pelle,B." . +_:N1c8949be1cd346828f52d90ad28b9a05 . +_:N67175c78c3344ffd923c08139d98402c "Adler,A." . +_:N67175c78c3344ffd923c08139d98402c "Melly,G." . + _:N4719715d02f744f1898ea574c29f29a4 . +_:N6903a7261bfd447a988f7c1285ce0c36 . + _:Nf301e652683d44b18eb59a4519a59ab0 . +_:N67175c78c3344ffd923c08139d98402c "Famulare,M." . +_:N67175c78c3344ffd923c08139d98402c "Lacombe,K." . +_:N67175c78c3344ffd923c08139d98402c "Gautom,R." . + + "MT873354.1" . +_:N868730c182184cfbbdaededd4fb0676c "Chaluvadi,S." . +_:N868730c182184cfbbdaededd4fb0676c "Lagerborg,K." . +_:N868730c182184cfbbdaededd4fb0676c "Sabeti,P.C." . +_:N868730c182184cfbbdaededd4fb0676c "Gladden-Young,A." . +_:N868730c182184cfbbdaededd4fb0676c "Ryan,E." . +_:N868730c182184cfbbdaededd4fb0676c "Lemieux,J.E." . +_:N868730c182184cfbbdaededd4fb0676c "Carter,A." . +_:N868730c182184cfbbdaededd4fb0676c "Anahtar,M." . +_:N868730c182184cfbbdaededd4fb0676c "Birren,B.W." . +_:N868730c182184cfbbdaededd4fb0676c "Smole,S." . +_:N868730c182184cfbbdaededd4fb0676c "Chapman,S.B." . +_:N868730c182184cfbbdaededd4fb0676c "Park,D.J." . +_:N215d39a15fa041c6babd1fec8ff4b83d "9.318195499"^^ . + _:N7ca5e3085d8f447eba99a6dad1620b1f . +_:N868730c182184cfbbdaededd4fb0676c "Branda,J." . +_:N868730c182184cfbbdaededd4fb0676c "Reilly,S." . +_:N868730c182184cfbbdaededd4fb0676c "Neumann,A." . +_:N215d39a15fa041c6babd1fec8ff4b83d "https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/assemble_refbased:v2.0.21.1 v. 2.0.21.1" . +_:N7ca5e3085d8f447eba99a6dad1620b1f "MT873354.1" . +_:N7ca5e3085d8f447eba99a6dad1620b1f . +_:N868730c182184cfbbdaededd4fb0676c "Gallagher,G." . +_:N868730c182184cfbbdaededd4fb0676c "DeRuff,K." . +_:N868730c182184cfbbdaededd4fb0676c "Pierce,V." . +_:N868730c182184cfbbdaededd4fb0676c "Cusick,C." . + _:Ncbd4170b1ba54a91b9f5a6daee79c537 . +_:N868730c182184cfbbdaededd4fb0676c "Rudy,M." . +_:N868730c182184cfbbdaededd4fb0676c "Siddle,K.J." . +_:N868730c182184cfbbdaededd4fb0676c "Shaw,B." . + _:N868730c182184cfbbdaededd4fb0676c . + _:N5c4415b01f80407b8516e1e7cac96f26 . +_:N868730c182184cfbbdaededd4fb0676c "MacInnis,B.L." . +_:N868730c182184cfbbdaededd4fb0676c "Gnirke,A." . +_:N868730c182184cfbbdaededd4fb0676c "Adams,G." . +_:N868730c182184cfbbdaededd4fb0676c "Lin,A.E." . +_:N868730c182184cfbbdaededd4fb0676c "Flowers,K." . +_:Ncbd4170b1ba54a91b9f5a6daee79c537 . +_:N5c4415b01f80407b8516e1e7cac96f26 . +_:N868730c182184cfbbdaededd4fb0676c "Turbett,S." . +_:N868730c182184cfbbdaededd4fb0676c "Slater,D." . +_:N868730c182184cfbbdaededd4fb0676c "Normandin,E." . +_:N868730c182184cfbbdaededd4fb0676c "Loreth,C." . +_:N7ca5e3085d8f447eba99a6dad1620b1f . +_:N868730c182184cfbbdaededd4fb0676c "LaRocque,R." . +_:N7ca5e3085d8f447eba99a6dad1620b1f . +_:N868730c182184cfbbdaededd4fb0676c "Rosenberg,E." . + _:N215d39a15fa041c6babd1fec8ff4b83d . +_:N868730c182184cfbbdaededd4fb0676c "Bauer,M." . +_:N7ca5e3085d8f447eba99a6dad1620b1f "Massachusetts General Hospital" . +_:N215d39a15fa041c6babd1fec8ff4b83d . +_:N868730c182184cfbbdaededd4fb0676c "Harris,J." . +_:N868730c182184cfbbdaededd4fb0676c "Tomkins-Tinch,C." . +_:N7ca5e3085d8f447eba99a6dad1620b1f "2020-05-06" . +_:Ncbd4170b1ba54a91b9f5a6daee79c537 "SARS-CoV-2/human/USA/MA-MGH-01350/2020" . +_:N868730c182184cfbbdaededd4fb0676c "Cerrato,F." . + + "MT627612.1" . +_:N787ec3cdaa3b44b6addfaa48ae5daf3a "minimap2 v. 2.17; 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National Research Center for Translational Medi" . +_:N711f2cee6b39421688e54d3cb0602641 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . +_:N26411c3735c0472ba4cc766f993f1ddc "2020-02-01" . + _:N26411c3735c0472ba4cc766f993f1ddc . +_:N26411c3735c0472ba4cc766f993f1ddc . +_:N711f2cee6b39421688e54d3cb0602641 "SRA1068259" . +_:N711f2cee6b39421688e54d3cb0602641 "YUN TAN" . +_:N013bef3b660b4299a57c6e3131f83edb . +_:N26411c3735c0472ba4cc766f993f1ddc "Shanghai Public Health Clinical Center, Fudan University, Shanghai, China" . +_:N63a04e659649498d88205fbe6bca27c6 . + _:N63a04e659649498d88205fbe6bca27c6 . +_:N26411c3735c0472ba4cc766f993f1ddc . + _:N013bef3b660b4299a57c6e3131f83edb . + _:Nd0ee4a4ea9c145cfaa0650acd608bfd8 . +_:N711f2cee6b39421688e54d3cb0602641 "PRJNA627662" . +_:Nd0ee4a4ea9c145cfaa0650acd608bfd8 "LIBRARY_STRATEGY: AMPLICON;" . +_:N711f2cee6b39421688e54d3cb0602641 "steventan@sjtu.edu.cn" . +_:N711f2cee6b39421688e54d3cb0602641 "Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine" . +_:Nd0ee4a4ea9c145cfaa0650acd608bfd8 . +_:N711f2cee6b39421688e54d3cb0602641 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . +_:N26411c3735c0472ba4cc766f993f1ddc "SRR11597148" . + + "MT449640.1" . +_:N6be8f10192f847bf835e802ba3427b0c "CZB Cliahub Consortium,C.C.C." . + _:Ndcf460ebe64846ff952dd84645532892 . +_:N682fbcceebbb43b4b2d0172f76dcf06c "SARS-CoV-2/human/USA/CA-CZB-1047/2020" . +_:Ndcf460ebe64846ff952dd84645532892 "minimap2 v. 2.17; ivar v. 1.2" . +_:N3215b52ff3944ded9605ffcc506c3892 . + _:N3215b52ff3944ded9605ffcc506c3892 . +_:N3215b52ff3944ded9605ffcc506c3892 . + _:N682fbcceebbb43b4b2d0172f76dcf06c . +_:N6be8f10192f847bf835e802ba3427b0c "Chan-Zuckerberg Biohub, 499 Illinois St, San Francisco, CA 94158, USA" . +_:N3215b52ff3944ded9605ffcc506c3892 "2020-04-03" . +_:N682fbcceebbb43b4b2d0172f76dcf06c . +_:N3215b52ff3944ded9605ffcc506c3892 . +_:N6be8f10192f847bf835e802ba3427b0c "Data Science" . +_:N3215b52ff3944ded9605ffcc506c3892 . +_:N3215b52ff3944ded9605ffcc506c3892 "MT449640.1" . +_:Ne05f1f42aa60427ebb2b660dd186df5f . + _:N6be8f10192f847bf835e802ba3427b0c . + _:Ne05f1f42aa60427ebb2b660dd186df5f . +_:Ndcf460ebe64846ff952dd84645532892 . + + "SRR11953676" . +_:N653ebb150e034144ad833851ffc162af "Christine Loreth" . +_:N4dd975552ef3489dae56e8ebad9c91b5 . +_:N653ebb150e034144ad833851ffc162af "Broad Institute of Harvard and MIT" . +_:N653ebb150e034144ad833851ffc162af "PRJNA622837" . +_:N653ebb150e034144ad833851ffc162af "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . +_:N0ad24ff5428948dc81be8a553cef3c04 . +_:N653ebb150e034144ad833851ffc162af "" . +_:N0acf419b4c2941cd9940a23b711b34c0 . +_:Nccfac8355d874335a6ca3973ae881a9e "LIBRARY_STRATEGY: RNA-Seq;" . +_:Nccfac8355d874335a6ca3973ae881a9e . +_:N653ebb150e034144ad833851ffc162af "SRA1084625" . + _:N653ebb150e034144ad833851ffc162af . +_:N4dd975552ef3489dae56e8ebad9c91b5 "Massachusetts General Hospital" . +_:N0ad24ff5428948dc81be8a553cef3c04 "SARS-CoV-2/human/USA/MA_MGH_00005/2020" . +_:N4dd975552ef3489dae56e8ebad9c91b5 . + _:N0ad24ff5428948dc81be8a553cef3c04 . +_:N653ebb150e034144ad833851ffc162af "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . +_:N4dd975552ef3489dae56e8ebad9c91b5 "2020-03-11" . + _:N0acf419b4c2941cd9940a23b711b34c0 . + _:N4dd975552ef3489dae56e8ebad9c91b5 . + _:Nccfac8355d874335a6ca3973ae881a9e . +_:N4dd975552ef3489dae56e8ebad9c91b5 "SRR11953676" . +_:N653ebb150e034144ad833851ffc162af "cloreth@broadinstitute.org" . + + "MT641699.1" . +_:Ndc58271c17b546f58e8637fc179588a2 "Hopkins,M." . +_:N76f2b841ffc74e14b7e29ebee84fd390 . +_:N76f2b841ffc74e14b7e29ebee84fd390 . + _:Neb5f8f7db6544909bc4056fa49de3017 . +_:N76f2b841ffc74e14b7e29ebee84fd390 "2020-03-11" . +_:Ndc58271c17b546f58e8637fc179588a2 "Thielen,P.M." . +_:Ndc58271c17b546f58e8637fc179588a2 "Infectious Disease" . +_:Ndc58271c17b546f58e8637fc179588a2 "Ernlund,A." . +_:Ndc58271c17b546f58e8637fc179588a2 "Zudock,K." . +_:Ndc58271c17b546f58e8637fc179588a2 "JHU SARS-CoV-2 Genome Sequencing, 3400 N. Charles St., Baltimore, MD 21218, USA" . +_:Ndc58271c17b546f58e8637fc179588a2 "Kirsche,M." . +_:N76f2b841ffc74e14b7e29ebee84fd390 . + _:N76f2b841ffc74e14b7e29ebee84fd390 . +_:Nc079caf2898249ad8bf7460fb019ddf3 "SARS-CoV-2/human/USA/MD-HP00057/2020" . +_:N8a7afd8727a64fd5a5dee9e5d62d7cf1 . +_:Ndc58271c17b546f58e8637fc179588a2 "Wohl,S." . +_:Ndc58271c17b546f58e8637fc179588a2 "Sadowski,N." . +_:Ndc58271c17b546f58e8637fc179588a2 "Timp,W." . +_:Ndc58271c17b546f58e8637fc179588a2 "Mehoke,T." . +_:Ndc58271c17b546f58e8637fc179588a2 "Howser,C." . + _:N8a7afd8727a64fd5a5dee9e5d62d7cf1 . + _:Ndc58271c17b546f58e8637fc179588a2 . +_:Ndc58271c17b546f58e8637fc179588a2 "Ray,S.C." . +_:Nc079caf2898249ad8bf7460fb019ddf3 . +_:Ndc58271c17b546f58e8637fc179588a2 "Fan,Y." . +_:Ndc58271c17b546f58e8637fc179588a2 "Falade-Nwulia,O." . +_:Ndc58271c17b546f58e8637fc179588a2 "Morris,P." . +_:Ndc58271c17b546f58e8637fc179588a2 "Gniazdowski,V." . +_:N76f2b841ffc74e14b7e29ebee84fd390 "MT646071.1" . +_:Ndc58271c17b546f58e8637fc179588a2 "Mostafa,H.H." . +_:Ndc58271c17b546f58e8637fc179588a2 "Schatz,M.C." . + _:Nc079caf2898249ad8bf7460fb019ddf3 . +_:Neb5f8f7db6544909bc4056fa49de3017 . +_:Neb5f8f7db6544909bc4056fa49de3017 "ARTIC v. 1" . +_:Ndc58271c17b546f58e8637fc179588a2 "Ramakrishnan,S." . + + "MT810526.1" . +_:Nd9b8a3af0b8042b69e507fc08ef53fd3 . +_:Nf480136aa87e4ed597b1e2d4cf44b402 "Department of Immunology" . +_:Nd9b8a3af0b8042b69e507fc08ef53fd3 . +_:N8797fd2b7ef741f9b1384c48a4386f75 . +_:Nd9b8a3af0b8042b69e507fc08ef53fd3 . +_:Nf480136aa87e4ed597b1e2d4cf44b402 "Basler,T." . +_:Nf480136aa87e4ed597b1e2d4cf44b402 "Shephard,J." . + _:N506b48b97563454a962dbcf69eb93572 . +_:Nf480136aa87e4ed597b1e2d4cf44b402 "Austin,B." . +_:N506b48b97563454a962dbcf69eb93572 . +_:Nf480136aa87e4ed597b1e2d4cf44b402 "SEARCH Alliance,S.D." . + _:Nd9b8a3af0b8042b69e507fc08ef53fd3 . +_:Nd9b8a3af0b8042b69e507fc08ef53fd3 "MT810526.1" . + _:N8797fd2b7ef741f9b1384c48a4386f75 . +_:Nfb3cb971f8a54be8926f320b213595f6 . + _:Nfb3cb971f8a54be8926f320b213595f6 . +_:N8797fd2b7ef741f9b1384c48a4386f75 "iVar v. 1.2.2" . + _:Nf480136aa87e4ed597b1e2d4cf44b402 . +_:N506b48b97563454a962dbcf69eb93572 "SARS-CoV-2/human/USA/SEARCH-1660-SAN/2020" . +_:Nf480136aa87e4ed597b1e2d4cf44b402 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . +_:Nd9b8a3af0b8042b69e507fc08ef53fd3 "2020-03-20" . + + "SRR11621921" . +_:N78282f01ddb34c44834c6cc955b97e76 "LIBRARY_STRATEGY: RNA-Seq;" . + _:N6965c1618bf14925b9e241f2ed65ef8a . +_:N6965c1618bf14925b9e241f2ed65ef8a "Laboratory Medicine" . +_:N6965c1618bf14925b9e241f2ed65ef8a "PRJNA610428" . +_:N115440e6f05443cc9cd827c6ef557167 . + _:N80762c50883d408c8d311dd0fe8c9f95 . +_:N6965c1618bf14925b9e241f2ed65ef8a "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . +_:N6965c1618bf14925b9e241f2ed65ef8a "Pavitra Roychoudhury" . +_:N6965c1618bf14925b9e241f2ed65ef8a "proychou@uw.edu" . +_:Nf56d8ec310004a72b04e213a4a118a4c . +_:N6965c1618bf14925b9e241f2ed65ef8a "SRA1069823" . +_:N6965c1618bf14925b9e241f2ed65ef8a "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . +_:N80762c50883d408c8d311dd0fe8c9f95 "University of Washington Virology Lab" . + _:Nf56d8ec310004a72b04e213a4a118a4c . + _:N115440e6f05443cc9cd827c6ef557167 . +_:N78282f01ddb34c44834c6cc955b97e76 . +_:N6965c1618bf14925b9e241f2ed65ef8a "University of Washington" . +_:N80762c50883d408c8d311dd0fe8c9f95 "SRR11621921" . + _:N78282f01ddb34c44834c6cc955b97e76 . +_:N80762c50883d408c8d311dd0fe8c9f95 "1970-01-01" . +_:N80762c50883d408c8d311dd0fe8c9f95 . +_:N80762c50883d408c8d311dd0fe8c9f95 "The real 'collection_date' is missing" . + + "MT704072.1" . +_:N84b5dae103b04e56bf6965c11f5f4d1a . + _:Nbd2efdc049164a36b31ac68da3f85068 . +_:N129204a46bf04761a6169d08382b5777 "SARS-CoV-2/human/USA/FL-BPHL-0254/2020" . +_:N6619e127a8a148c0ad660c55bc356782 . +_:Nbd2efdc049164a36b31ac68da3f85068 . +_:Nbd2efdc049164a36b31ac68da3f85068 "MT704072.1" . +_:Nea400043d6694950943506952c977b37 "Schmedes,S." . +_:Nea400043d6694950943506952c977b37 "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . +_:Nbd2efdc049164a36b31ac68da3f85068 . +_:Nbd2efdc049164a36b31ac68da3f85068 "2020-05-05" . +_:N129204a46bf04761a6169d08382b5777 . + _:N84b5dae103b04e56bf6965c11f5f4d1a . + _:N6619e127a8a148c0ad660c55bc356782 . + _:N129204a46bf04761a6169d08382b5777 . + _:Nea400043d6694950943506952c977b37 . +_:Nea400043d6694950943506952c977b37 "Blanton,J." . +_:Nea400043d6694950943506952c977b37 "BPHL" . +_:N84b5dae103b04e56bf6965c11f5f4d1a "bwa v. 0.7.17; ivar v. 1.2.2" . + + "SRR11772025" . +_:Nd84405d672c94967a4741c8e0a3e6ccb "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . +_:N85c931965e2d44e19781dd9bc94b1a9a "LIBRARY_STRATEGY: RNA-Seq;" . + _:Nb8478dcab68f4c75afb489bc878ba5a3 . + _:Ndca28e4a4f9b4a4ba7286a69a2c3a7d3 . +_:Nad937e1661384c3fb3e8b0ef8856ddc1 "1970-01-01" . +_:Nad937e1661384c3fb3e8b0ef8856ddc1 . +_:Nb8478dcab68f4c75afb489bc878ba5a3 . +_:Nd84405d672c94967a4741c8e0a3e6ccb "PRJNA610428" . +_:Ndca28e4a4f9b4a4ba7286a69a2c3a7d3 . +_:N85c931965e2d44e19781dd9bc94b1a9a . + _:Nad937e1661384c3fb3e8b0ef8856ddc1 . +_:Nd84405d672c94967a4741c8e0a3e6ccb "SRA1074213" . +_:Nd84405d672c94967a4741c8e0a3e6ccb "Laboratory Medicine; University of Washington; 1100 Fairview Avenue North, E5-110; Seattle; WA; USA; Postal code 98109" . +_:Nd84405d672c94967a4741c8e0a3e6ccb "proychou@uw.edu" . +_:Nd84405d672c94967a4741c8e0a3e6ccb "University of Washington" . + _:Nd84405d672c94967a4741c8e0a3e6ccb . +_:Nad937e1661384c3fb3e8b0ef8856ddc1 "SRR11772025" . +_:Nad937e1661384c3fb3e8b0ef8856ddc1 "The real 'collection_date' is missing" . + _:N85c931965e2d44e19781dd9bc94b1a9a . +_:Nd84405d672c94967a4741c8e0a3e6ccb "Laboratory Medicine" . +_:Nad937e1661384c3fb3e8b0ef8856ddc1 "University of Washington Virology Lab" . +_:Nd84405d672c94967a4741c8e0a3e6ccb "Pavitra Roychoudhury" . + + "MT539174.1" . + _:N7082869fac004531b39fdc539c1aacbd . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Dutta,J." . + _:N14664cb26d6546f394d50c5b954b20dc . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Aberg,J." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Miorin,L." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Liu,W." . + _:Nc8c5dda24b1f45c2b92b56713793f28c . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Patel,G." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Albuquerque,B." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Polanco,J." . +_:Na15c48819c844a13a4de2aba25f52898 . +_:N7082869fac004531b39fdc539c1aacbd "Minimap2, Pilon v. 2.17-r941, v.1.23" . +_:N2e2373e98a7b4b0da71ce842d4602649 "SARS-CoV-2/human/USA/NY-PV09125/2020" . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Albrecht,R." . + _:Na15c48819c844a13a4de2aba25f52898 . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Wang,Y.C." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Sordillo,E." . +_:Na15c48819c844a13a4de2aba25f52898 "passage_history: sequence was derived directly from the original sample material" . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Smith,M." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Simon,V." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Fabre,S." . +_:Na15c48819c844a13a4de2aba25f52898 . + _:N2e2373e98a7b4b0da71ce842d4602649 . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Gitman,M." . +_:Na15c48819c844a13a4de2aba25f52898 . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Gonzalez-Reiche,A.S." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Krammer,F." . +_:Na15c48819c844a13a4de2aba25f52898 "MT370993.1" . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Khan,Z." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Paniz-Mondolfi,A." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Hernandez,M." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Sullivan,M." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Soto,J." . +_:N2e2373e98a7b4b0da71ce842d4602649 . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Obla,A." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Garcia-Sastre,A." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Sebra,R." . +_:N14664cb26d6546f394d50c5b954b20dc . +_:Na15c48819c844a13a4de2aba25f52898 "2020-03-19" . +_:N7082869fac004531b39fdc539c1aacbd . +_:Nc8c5dda24b1f45c2b92b56713793f28c "Sridhar,S.H." . +_:Nc8c5dda24b1f45c2b92b56713793f28c "van Bakel,H." . + + "MT499185.1" . +_:N5b5a5f51ed654411a02bdf880f1596ea "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . +_:N5b5a5f51ed654411a02bdf880f1596ea "Division of Infectious Diseases" . +_:Nfbfe9a455c6b4dd29a46d402bec5a7f9 "minimap2 v. 2.17; ivar v. 1.2" . +_:N2bffff418b724e679abd467f38ad4a2a . +_:N5b5a5f51ed654411a02bdf880f1596ea "CZB Cliahub Consortium,C.C.C." . + _:Nae04a508ffcc418d95f6812b60d14bbf . +_:N2bffff418b724e679abd467f38ad4a2a . +_:Nc9e4e6b92c4f43469d13e86f33beb053 . +_:N5b5a5f51ed654411a02bdf880f1596ea "Gorzynski,J." . +_:N5b5a5f51ed654411a02bdf880f1596ea "Bustamante,C." . +_:N5b5a5f51ed654411a02bdf880f1596ea "Parikh,V.N." . +_:N5b5a5f51ed654411a02bdf880f1596ea "Wheeler,M.T." . +_:N5b5a5f51ed654411a02bdf880f1596ea "Andrews,J." . +_:N5b5a5f51ed654411a02bdf880f1596ea "DeJong,H.N." . +_:N5b5a5f51ed654411a02bdf880f1596ea "Pinksy,B." . +_:N5b5a5f51ed654411a02bdf880f1596ea "Ashley,E." . + _:N5b5a5f51ed654411a02bdf880f1596ea . +_:N5b5a5f51ed654411a02bdf880f1596ea "Rivas,M." . + _:Nc9e4e6b92c4f43469d13e86f33beb053 . +_:Nc9e4e6b92c4f43469d13e86f33beb053 "SARS-CoV-2/human/USA/CA-CZB-1210/2020" . + _:Nfbfe9a455c6b4dd29a46d402bec5a7f9 . + _:N2bffff418b724e679abd467f38ad4a2a . +_:Nfbfe9a455c6b4dd29a46d402bec5a7f9 . +_:N2bffff418b724e679abd467f38ad4a2a . +_:N2bffff418b724e679abd467f38ad4a2a "2020-03-25" . +_:N2bffff418b724e679abd467f38ad4a2a . +_:N5b5a5f51ed654411a02bdf880f1596ea "Walter,K." . +_:Nae04a508ffcc418d95f6812b60d14bbf . +_:N2bffff418b724e679abd467f38ad4a2a "MT499185.1" . + + "MT810888.1" . + _:Nf8f9b7cf3530400eb4b5d88b1f84fa0f . +_:Nd4d7c83ebb8c42cfa0c29c3d0647fbcf "SARS-CoV-2/human/USA/SEARCH-1614-SAN/2020" . + _:Nd4d7c83ebb8c42cfa0c29c3d0647fbcf . +_:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Quigley,M." . +_:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . +_:Ne96a2b76163c4be0af7e8d5afab0ae81 . +_:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Department of Immunology" . +_:Ne96a2b76163c4be0af7e8d5afab0ae81 . + _:N4554fcf9a7a6469c8fab29ebc54a8f4b . +_:N4554fcf9a7a6469c8fab29ebc54a8f4b "iVar v. 1.2.2" . +_:Ne96a2b76163c4be0af7e8d5afab0ae81 . +_:N4554fcf9a7a6469c8fab29ebc54a8f4b . +_:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Mchardy,I." . +_:Nf670eaf02d354330a3b1ade62e1586dd . +_:Ne96a2b76163c4be0af7e8d5afab0ae81 "2020-05-19" . +_:Nd4d7c83ebb8c42cfa0c29c3d0647fbcf . +_:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "Stefanski,E." . +_:Nf8f9b7cf3530400eb4b5d88b1f84fa0f "SEARCH Alliance,S.D." . +_:Ne96a2b76163c4be0af7e8d5afab0ae81 "MT810888.1" . + _:Ne96a2b76163c4be0af7e8d5afab0ae81 . + _:Nf670eaf02d354330a3b1ade62e1586dd . + + "MT252787.1" . +_:Na640ccd8e4054c68855e6fba03f08860 "MT252787.1" . + _:Nd529a7a32ae04afda3b94326fa3a42b7 . +_:Na640ccd8e4054c68855e6fba03f08860 "2020-03-09" . +_:Na640ccd8e4054c68855e6fba03f08860 . + _:N8cec45867c9f4ec684f1091c8e4e3dae . +_:Nd529a7a32ae04afda3b94326fa3a42b7 "Jerome,K." . +_:Ncaf971481bbb4fdb9310e47517a76666 "SARS-CoV-2/human/USA/WA-UW64/2020" . +_:Ne9d794983371406f8e1503496919a0d1 "custom pipeline v. 2020-03" . +_:N8cec45867c9f4ec684f1091c8e4e3dae . +_:Ncaf971481bbb4fdb9310e47517a76666 . +_:Ne9d794983371406f8e1503496919a0d1 . +_:Nd529a7a32ae04afda3b94326fa3a42b7 "Greninger,A." . + _:Ne9d794983371406f8e1503496919a0d1 . + _:Na640ccd8e4054c68855e6fba03f08860 . + _:Ncaf971481bbb4fdb9310e47517a76666 . +_:Nd529a7a32ae04afda3b94326fa3a42b7 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . +_:Nd529a7a32ae04afda3b94326fa3a42b7 "Roychoudhury,P." . +_:Nd529a7a32ae04afda3b94326fa3a42b7 "Laboratory Medicine" . +_:Na640ccd8e4054c68855e6fba03f08860 . + + "MT482121.1" . +_:N4555c24a6ef84963a801cd9ea908f46b . +_:N461a0d45d0994adcad6d6af65194d032 . +_:N3cdf7054883442eb93694096eacc979f "Division of Consolidated Laboratory Services, 600 N 5th Street, Richmond, VA 23219, USA" . + _:N2de14448073348a0922a80f10311d025 . +_:N461a0d45d0994adcad6d6af65194d032 "SARS-CoV-2/human/USA/VA-DCLS-0135/2020" . +_:N5fa4f27a415c4f0abc1e799d604bdc99 "MT482121.1" . +_:N3cdf7054883442eb93694096eacc979f "Department of General Services" . +_:N5fa4f27a415c4f0abc1e799d604bdc99 . + _:N3cdf7054883442eb93694096eacc979f . +_:N5fa4f27a415c4f0abc1e799d604bdc99 . +_:N5fa4f27a415c4f0abc1e799d604bdc99 "2020-04-15" . +_:N3cdf7054883442eb93694096eacc979f "Fink,L." . +_:N4555c24a6ef84963a801cd9ea908f46b "minimap2 v. 2.17; ivar v. 1.1" . +_:N2de14448073348a0922a80f10311d025 . + _:N461a0d45d0994adcad6d6af65194d032 . + _:N4555c24a6ef84963a801cd9ea908f46b . +_:N5fa4f27a415c4f0abc1e799d604bdc99 "The 'collection_date' is estimated (the original date was: 2020-04)" . + _:N5fa4f27a415c4f0abc1e799d604bdc99 . + + "MT345837.1" . +_:N4fb5d0604d534f2f990c60bcacb2afa5 . + _:Ne87b893745514f05b6009ea7a4e709ee . +_:N76a96e5d2bb7475f8e02cb53431eba67 "bwa v. 0.7.17-r1188; ivar v. 1.2" . +_:Ne87b893745514f05b6009ea7a4e709ee . +_:N4de50d1f15c1477c81d0c259343ac9d2 "Young,E." . +_:N4de50d1f15c1477c81d0c259343ac9d2 "Department of Health" . +_:N4de50d1f15c1477c81d0c259343ac9d2 "Utah Public Health Laboratory, 4431 2700 W, SLC, UT 84129, USA" . +_:N4de50d1f15c1477c81d0c259343ac9d2 "Oakeson,K." . +_:N1a98befbe89747dca7f32354912577a2 . +_:Ne87b893745514f05b6009ea7a4e709ee . +_:Ne87b893745514f05b6009ea7a4e709ee "2020-03-05" . + _:N4fb5d0604d534f2f990c60bcacb2afa5 . + _:N4de50d1f15c1477c81d0c259343ac9d2 . + _:N1a98befbe89747dca7f32354912577a2 . +_:N1a98befbe89747dca7f32354912577a2 "SARS-CoV-2/human/USA/UT-00004/2020" . +_:Ne87b893745514f05b6009ea7a4e709ee "MT334524.1" . + _:N76a96e5d2bb7475f8e02cb53431eba67 . +_:N76a96e5d2bb7475f8e02cb53431eba67 . + + "MT325591.1" . + _:Nd108d8cd874a4cc0be7341493e78ed20 . +_:N8cb801bcb284464f8485e82d208c873c . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Keckler,M.S." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Division of Viral Diseases" . + _:Nfdbf4af74a044c37ad0aac88f5aa19ed . +_:Nc106f102cec547f499f26fb586b7cef7 "MT325591.1" . + _:Ndd09b50f566040b39d30e838b0b0ea11 . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Li,Y." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Laufer Halpin,A.S." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Tong,S." . + _:Nc106f102cec547f499f26fb586b7cef7 . +_:Nc106f102cec547f499f26fb586b7cef7 . +_:Ndd09b50f566040b39d30e838b0b0ea11 "bcftools v. 1.9; bowtie2 v. 2.3.3.1" . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Queen,K." . + _:N8cb801bcb284464f8485e82d208c873c . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Uehara,A." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Elkins,C.A." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Wang,H." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Marine,R." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Centers for Disease Control and Prevention, 1600 Clifton Rd NE, Atlanta, GA 30033, USA" . +_:Nfdbf4af74a044c37ad0aac88f5aa19ed "SARS-CoV-2/human/USA/NC-CDC-6999/2020" . +_:Nc106f102cec547f499f26fb586b7cef7 . +_:Nc106f102cec547f499f26fb586b7cef7 . +_:Ndd09b50f566040b39d30e838b0b0ea11 "100.0"^^ . +_:Ndd09b50f566040b39d30e838b0b0ea11 . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Paden,C.R." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Zhang,J." . +_:Nd108d8cd874a4cc0be7341493e78ed20 "Tao,Y." . +_:Nfdbf4af74a044c37ad0aac88f5aa19ed . +_:Nc106f102cec547f499f26fb586b7cef7 "5' sequence is the primer sequence used" . +_:Nc106f102cec547f499f26fb586b7cef7 "2020-03-06" . + + "MT451753.1" . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Sherry,N.L." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Dougal,S." . +_:N64fdf50e1d4b40b38d2040d62cd372ce . + _:N67f5f964981e41f992577f7c5e39cd21 . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Seemann,T." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Williamson,D.A." . +_:N67f5f964981e41f992577f7c5e39cd21 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Ballard,S.A." . +_:Ne73f5d4c3bed4be99b5571e7f1d9faf7 . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Horan,K." . + _:N64fdf50e1d4b40b38d2040d62cd372ce . + _:Ne73f5d4c3bed4be99b5571e7f1d9faf7 . +_:Neb80bc8ee9d34f84bf69f6839abe365f "van Diemen,A." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Duchene,S." . +_:N64fdf50e1d4b40b38d2040d62cd372ce "MT451753.1" . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Stinear,T.P." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Caly,L." . +_:Ne73f5d4c3bed4be99b5571e7f1d9faf7 "SARS-CoV-2/human/AUS/VIC1114/2020" . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Schultz,M.B." . +_:N64fdf50e1d4b40b38d2040d62cd372ce "2020-04-07" . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Lane,C.R." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Sutton,B." . +_:N67f5f964981e41f992577f7c5e39cd21 . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Druce,J." . + _:Nb5771b4031cf47fe8898c8e5bc2273bc . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Hoang,T." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Sait,M." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Goncalves da Silva,A." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Alpren,C." . +_:Nb5771b4031cf47fe8898c8e5bc2273bc . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Catton,M." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Easton,M." . +_:Neb80bc8ee9d34f84bf69f6839abe365f "Howden,B.P." . +_:N67f5f964981e41f992577f7c5e39cd21 "3000.0"^^ . + _:Neb80bc8ee9d34f84bf69f6839abe365f . +_:N64fdf50e1d4b40b38d2040d62cd372ce . + + "MT632971.1" . +_:N549f0f8c62dd4c978bbe0222e9963df5 "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . +_:N432b906cb3414ea88e010f5a368c1afa . +_:N432b906cb3414ea88e010f5a368c1afa . +_:N549f0f8c62dd4c978bbe0222e9963df5 "CZB Cliahub Consortium,C.C.C." . +_:Ne3ef9451dbb94d9bb7b493cce0d70171 "SARS-CoV-2/human/USA/CA-CZB-1600/2020" . +_:N549f0f8c62dd4c978bbe0222e9963df5 "Division of Infectious Diseases" . + _:Ne3ef9451dbb94d9bb7b493cce0d70171 . + _:N549f0f8c62dd4c978bbe0222e9963df5 . + _:N432b906cb3414ea88e010f5a368c1afa . +_:N432b906cb3414ea88e010f5a368c1afa . +_:N79adf3a8eb5e4005bf91cc2694f08f0c . + _:N79adf3a8eb5e4005bf91cc2694f08f0c . +_:N432b906cb3414ea88e010f5a368c1afa "MT628252.1" . +_:N56cd0337e65b47d3aaa429b5ee3c913e . +_:Ne3ef9451dbb94d9bb7b493cce0d70171 . +_:N432b906cb3414ea88e010f5a368c1afa . +_:N432b906cb3414ea88e010f5a368c1afa "2020-04-01" . + _:N56cd0337e65b47d3aaa429b5ee3c913e . +_:N79adf3a8eb5e4005bf91cc2694f08f0c "minimap2 v. 2.17; ivar v. 1.2" . + + "MT810827.1" . +_:N67961bfb62e84b558845485483224ba7 "Department of Immunology" . +_:Nff11d32003144ea5ae80c5bfc07c6d97 . + _:N726e52b345504beeacd6d197164a40a9 . +_:N67961bfb62e84b558845485483224ba7 "SEARCH Alliance,S.D." . +_:N726e52b345504beeacd6d197164a40a9 . +_:N726e52b345504beeacd6d197164a40a9 . +_:Nff11d32003144ea5ae80c5bfc07c6d97 "SARS-CoV-2/human/USA/SEARCH-1448-SAN/2020" . +_:N302f164d5abd400fb55f77f7bbf51dab . +_:N14cb47f7b323483f8090036a3d711193 "iVar v. 1.2.2" . +_:N67961bfb62e84b558845485483224ba7 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . +_:N67961bfb62e84b558845485483224ba7 "Quigley,M." . +_:N726e52b345504beeacd6d197164a40a9 "MT810827.1" . +_:N14cb47f7b323483f8090036a3d711193 . + _:N302f164d5abd400fb55f77f7bbf51dab . +_:N726e52b345504beeacd6d197164a40a9 "2020-03-26" . + _:Nff11d32003144ea5ae80c5bfc07c6d97 . +_:N726e52b345504beeacd6d197164a40a9 . +_:N67961bfb62e84b558845485483224ba7 "Stefanski,E." . + _:N14cb47f7b323483f8090036a3d711193 . + _:N67961bfb62e84b558845485483224ba7 . +_:N67961bfb62e84b558845485483224ba7 "Mchardy,I." . + + "MT612272.1" . +_:N1c7f27da8376410aa569ee238aa6583b "Dolores de Jesus da Costa,M." . +_:N1c7f27da8376410aa569ee238aa6583b "Ximenes,J." . +_:N0c958e6633b14f28b74fb4550dd3f6b6 "MT612272.1" . +_:N1c7f27da8376410aa569ee238aa6583b "Meumann,E." . +_:N1c7f27da8376410aa569ee238aa6583b "Barreto,I." . +_:N0c958e6633b14f28b74fb4550dd3f6b6 "Victorian Infectious Diseases Reference Laboratory (VIDRL)" . +_:Nbd9aa740da8f46d1b43bb0b23593aa2c . +_:N1c7f27da8376410aa569ee238aa6583b "Druce,J." . +_:N0c958e6633b14f28b74fb4550dd3f6b6 . + _:Nbd9aa740da8f46d1b43bb0b23593aa2c . +_:Ncecca2c6388e48bfa9c23e4065e75acd . +_:N423237c1703548ebb4a771edd947ed8a . +_:N1c7f27da8376410aa569ee238aa6583b "Soares da Silva,E." . +_:N1c7f27da8376410aa569ee238aa6583b "Canisia,D." . +_:N1c7f27da8376410aa569ee238aa6583b "Caly,L." . +_:N1c7f27da8376410aa569ee238aa6583b "Marr,I." . +_:N1c7f27da8376410aa569ee238aa6583b "Jayanti Pereira Tilman,A." . +_:N0c958e6633b14f28b74fb4550dd3f6b6 . +_:N1c7f27da8376410aa569ee238aa6583b "Salles de Sousa,A." . +_:N1c7f27da8376410aa569ee238aa6583b "Sait,M." . +_:N1c7f27da8376410aa569ee238aa6583b "Sherry,N." . +_:N1c7f27da8376410aa569ee238aa6583b "Antonia da Costa,E." . +_:N1c7f27da8376410aa569ee238aa6583b "Douglas,N." . +_:N1c7f27da8376410aa569ee238aa6583b "Wapling,J." . +_:N0c958e6633b14f28b74fb4550dd3f6b6 "2020-05-17" . + _:N423237c1703548ebb4a771edd947ed8a . +_:N1c7f27da8376410aa569ee238aa6583b "Freeman,K." . +_:N1c7f27da8376410aa569ee238aa6583b "Dakh,F." . + _:N0c958e6633b14f28b74fb4550dd3f6b6 . + _:Ncecca2c6388e48bfa9c23e4065e75acd . + _:N1c7f27da8376410aa569ee238aa6583b . +_:N1c7f27da8376410aa569ee238aa6583b "Francis,J." . +_:Ncecca2c6388e48bfa9c23e4065e75acd "SARS-CoV-2/human/AUS/VIC1700/2020" . +_:N1c7f27da8376410aa569ee238aa6583b "Schultz,M.B." . +_:N1c7f27da8376410aa569ee238aa6583b "Seemann,T." . +_:N1c7f27da8376410aa569ee238aa6583b "Baird,R." . +_:N423237c1703548ebb4a771edd947ed8a "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . + + "SRR11953850" . + _:Nbe303c5d9cdf40b39b995c8676527a31 . +_:Nbcd2ee93d8a0431f8a16832c022a833f . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . + _:N46c4b1f723ae415695d7ffb9c6d0a7a5 . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "SRA1084625" . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "" . +_:Nbe303c5d9cdf40b39b995c8676527a31 "SRR11953850" . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "cloreth@broadinstitute.org" . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Infectious Disease Program; Broad Institute of Harvard and MIT; 75 Ames St; Cambridge; Massachusetts; USA; Postal code 02142" . +_:Nbe303c5d9cdf40b39b995c8676527a31 "Massachusetts General Hospital" . +_:Nbcd2ee93d8a0431f8a16832c022a833f "LIBRARY_STRATEGY: RNA-Seq;" . +_:Nbe303c5d9cdf40b39b995c8676527a31 . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "PRJNA622837" . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Broad Institute of Harvard and MIT" . +_:Nbe303c5d9cdf40b39b995c8676527a31 "2020-03-07" . +_:N0eb6a2d2090f403184c7f0df587d3781 . + _:N0eb6a2d2090f403184c7f0df587d3781 . +_:N46c4b1f723ae415695d7ffb9c6d0a7a5 "Christine Loreth" . +_:N42435b98b6dc44cd81da75d3fdc25a83 "SARS-CoV-2/human/USA/MA_MGH_00433/2020" . + _:N42435b98b6dc44cd81da75d3fdc25a83 . +_:N42435b98b6dc44cd81da75d3fdc25a83 . +_:Nbe303c5d9cdf40b39b995c8676527a31 . + _:Nbcd2ee93d8a0431f8a16832c022a833f . + + "MT295464.1" . +_:N736fe805658f411689cd7e10c030530f . +_:N814a3877bf7e488d925c600f4760e12b "Elbadry,M.A." . +_:N7cb9c98245a841f89f808449e4ba6313 "CLC Genomic Workbench v. 10" . + _:N31680becbd8848bba00a736374ab6510 . +_:N7cb9c98245a841f89f808449e4ba6313 . +_:N814a3877bf7e488d925c600f4760e12b "Gibson,J.C." . + _:N736fe805658f411689cd7e10c030530f . +_:N814a3877bf7e488d925c600f4760e12b "Morris,J.G. Jr." . +_:N736fe805658f411689cd7e10c030530f "2020-03-10" . +_:N7cb9c98245a841f89f808449e4ba6313 "1.169"^^ . + _:Nc8eb014db2c242f5b1d0767a172c3b8f . +_:N31680becbd8848bba00a736374ab6510 "SARS CoV-2/human/USA/UF-1/2020" . +_:N814a3877bf7e488d925c600f4760e12b "Alam,M." . +_:N31680becbd8848bba00a736374ab6510 . +_:N736fe805658f411689cd7e10c030530f . +_:N814a3877bf7e488d925c600f4760e12b "Waltzek,T.B." . + _:N814a3877bf7e488d925c600f4760e12b . +_:N814a3877bf7e488d925c600f4760e12b "Stephenson,C.J." . +_:N814a3877bf7e488d925c600f4760e12b "Lednicky,J.A." . +_:N814a3877bf7e488d925c600f4760e12b "Subramaniam,K." . +_:N736fe805658f411689cd7e10c030530f "MT295464.1" . + _:N7cb9c98245a841f89f808449e4ba6313 . +_:Nc8eb014db2c242f5b1d0767a172c3b8f . +_:N736fe805658f411689cd7e10c030530f . + + "MT666099.1" . +_:N2fd6032e17e641fd99c6cc36f61b6f35 . + _:N308e6a9b3ac94e99b583b9664c1d0413 . +_:N551d6de1d4604fba8bc8625822fd3d30 "Habib,M.A." . +_:N551d6de1d4604fba8bc8625822fd3d30 "Molla,M.M.A." . 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July-2020" . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Lutz,B.R." . +_:Nc0951773cf684dc48104876d57f6e730 "MT831255.1" . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Sibley,T.R." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Lindquist,S." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Englund,J.A." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Bedford,T." . +_:Nc0951773cf684dc48104876d57f6e730 "2020-06-02" . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Fay,K." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "University of Washington Medical Center" . +_:N2ccf63b64c0b46d1855d7bc94b44f780 . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Gautom,R." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Frazar,C.D." . +_:N01f2db2294484414aa9d7e378de503c6 . + _:Nc0951773cf684dc48104876d57f6e730 . +_:Nc0951773cf684dc48104876d57f6e730 . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Nickerson,D.A." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Ilcisin,M." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Rieder,M.J." . +_:N78073fb3b1574ea7afc244daf4bbfcc2 "Boeckh,M." . 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+_:N6c4e7ad57e5241ff838304a3c4cafc77 "Utah Public Health Laboratory" . +_:N6c4e7ad57e5241ff838304a3c4cafc77 . +_:Ndb7ef9dcc3e94651b0459664f7186a1d "eriny@utah.gov" . +_:N0da175695d414b3697290879112bf36d . +_:Nef6613fad4184151a7e90e6e21d30b69 "Clinical" . +_:N6c4e7ad57e5241ff838304a3c4cafc77 "The 'collection_date' is estimated (the original date was: 2020-03)" . +_:Nef6613fad4184151a7e90e6e21d30b69 . + _:Nef6613fad4184151a7e90e6e21d30b69 . + _:N6c4e7ad57e5241ff838304a3c4cafc77 . + _:Ndb7ef9dcc3e94651b0459664f7186a1d . +_:N6c4e7ad57e5241ff838304a3c4cafc77 "SRR11479027" . +_:Ndb7ef9dcc3e94651b0459664f7186a1d "Department of Health; Utah Public Health Laboratory; 4431 2700 W; Salt Lake City; UT; USA; Postal code 84129" . +_:N0da175695d414b3697290879112bf36d "LIBRARY_STRATEGY: AMPLICON;" . +_:N6c4e7ad57e5241ff838304a3c4cafc77 "2020-03-15" . + _:N0da175695d414b3697290879112bf36d . + _:Na4d46ded6c0146fb9abb657a6dc5f952 . +_:Ndb7ef9dcc3e94651b0459664f7186a1d "Utah Public Health Laboratory" . +_:Na4d46ded6c0146fb9abb657a6dc5f952 . +_:Ndb7ef9dcc3e94651b0459664f7186a1d "Department of Health" . +_:Ndb7ef9dcc3e94651b0459664f7186a1d "SRA1062242" . +_:Ndb7ef9dcc3e94651b0459664f7186a1d "Department of Health; Utah Public Health Laboratory; 4431 2700 W; Salt Lake City; UT; USA; Postal code 84129" . + + "MT322419.1" . +_:N02fcdaf3df904de4a85643aea5d86b98 . +_:N02fcdaf3df904de4a85643aea5d86b98 "custom pipeline v. 2020-03" . +_:N8b5ce3eeda674f50b0cd1764446eea77 "Roychoudhury,P." . +_:N8b5ce3eeda674f50b0cd1764446eea77 "Greninger,A." . + _:N9156ac84f97e4abc9d25ca3b9b59f47e . +_:N8b5ce3eeda674f50b0cd1764446eea77 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . +_:N2153dbb756c9413a9fd5aa8d26b3e7fe "MT263402.1" . + _:N02fcdaf3df904de4a85643aea5d86b98 . + _:N8b5ce3eeda674f50b0cd1764446eea77 . +_:N8b5ce3eeda674f50b0cd1764446eea77 "Laboratory Medicine" . +_:N9156ac84f97e4abc9d25ca3b9b59f47e . +_:N2153dbb756c9413a9fd5aa8d26b3e7fe "2020-03-23" . + _:N2153dbb756c9413a9fd5aa8d26b3e7fe . +_:N8b5ce3eeda674f50b0cd1764446eea77 "Jerome,K." . +_:N2153dbb756c9413a9fd5aa8d26b3e7fe . + _:N521aee7881444902b1ec67c44d7040af . +_:N9156ac84f97e4abc9d25ca3b9b59f47e "SARS-CoV-2/human/USA/WA-UW322/2020" . +_:N521aee7881444902b1ec67c44d7040af . +_:N2153dbb756c9413a9fd5aa8d26b3e7fe . + + "MT612185.1" . +_:N13775760fb9f45e89536df1380186a33 "Caly,L." . +_:N13775760fb9f45e89536df1380186a33 "Barreto,I." . +_:N7760ce291a6d48a890c2ff882aa1b0b2 "minimap2 v. 2.17; iVar v. 1.2.1; samtools v. 1.10" . +_:N13775760fb9f45e89536df1380186a33 "Sherry,N." . +_:N13775760fb9f45e89536df1380186a33 "Wapling,J." . +_:N13775760fb9f45e89536df1380186a33 "Douglas,N." . +_:N13775760fb9f45e89536df1380186a33 "Druce,J." . +_:N13775760fb9f45e89536df1380186a33 "Freeman,K." . +_:N13775760fb9f45e89536df1380186a33 "Salles de Sousa,A." . + _:N13775760fb9f45e89536df1380186a33 . +_:N0c8ae76f36ed4b7f99ad28abd44bf435 "The 'collection_date' is estimated (the original date was: 2020)" . 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+_:N13775760fb9f45e89536df1380186a33 "Antonia da Costa,E." . +_:N13775760fb9f45e89536df1380186a33 "Marr,I." . +_:N0c8ae76f36ed4b7f99ad28abd44bf435 "MT612185.1" . +_:N13775760fb9f45e89536df1380186a33 "Jayanti Pereira Tilman,A." . +_:N13775760fb9f45e89536df1380186a33 "Ximenes,J." . +_:N7760ce291a6d48a890c2ff882aa1b0b2 . +_:N310e11b121904418a58edc4373e1b6cb "SARS-CoV-2/human/AUS/VIC1575/2020" . + _:N7760ce291a6d48a890c2ff882aa1b0b2 . + + "MT460140.1" . +_:Nab11697d04a641bead72e9b322f2075d "Goncalves da Silva,A." . +_:Nab11697d04a641bead72e9b322f2075d "Catton,M." . + _:Nab11697d04a641bead72e9b322f2075d . + _:N7ba4a68a8e584c7abbef9bedd29cb4b6 . +_:Nab11697d04a641bead72e9b322f2075d "van Diemen,A." . +_:Nab11697d04a641bead72e9b322f2075d "Seemann,T." . +_:Ne7dcb631091d4bb8941e141c72af99e4 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . +_:Nab11697d04a641bead72e9b322f2075d "Caly,L." . +_:Nab11697d04a641bead72e9b322f2075d "Hoang,T." . +_:Nab11697d04a641bead72e9b322f2075d "Lane,C.R." . +_:N22d306d7cc0d40de988a49530ec1e6b3 . +_:N7ba4a68a8e584c7abbef9bedd29cb4b6 . +_:N7ba4a68a8e584c7abbef9bedd29cb4b6 "MT451841.1" . +_:Nab11697d04a641bead72e9b322f2075d "Stinear,T.P." . +_:Nab11697d04a641bead72e9b322f2075d "Dougal,S." . +_:Nab11697d04a641bead72e9b322f2075d "Alpren,C." . + _:N22d306d7cc0d40de988a49530ec1e6b3 . +_:Na66b657dbb24472f8f87a2daf3a7b9cb . +_:N7ba4a68a8e584c7abbef9bedd29cb4b6 . +_:Nab11697d04a641bead72e9b322f2075d "Howden,B.P." . + _:Ne7dcb631091d4bb8941e141c72af99e4 . +_:Nab11697d04a641bead72e9b322f2075d "Sherry,N.L." . +_:Nab11697d04a641bead72e9b322f2075d "Easton,M." . +_:Nab11697d04a641bead72e9b322f2075d "Ballard,S.A." . +_:Nab11697d04a641bead72e9b322f2075d "Druce,J." . +_:Nab11697d04a641bead72e9b322f2075d "Sait,M." . +_:Nab11697d04a641bead72e9b322f2075d "Duchene,S." . + _:Na66b657dbb24472f8f87a2daf3a7b9cb . +_:N7ba4a68a8e584c7abbef9bedd29cb4b6 "2020-04-14" . +_:Nab11697d04a641bead72e9b322f2075d "Williamson,D.A." . +_:Ne7dcb631091d4bb8941e141c72af99e4 . +_:N22d306d7cc0d40de988a49530ec1e6b3 "SARS-CoV-2/human/AUS/VIC1273/2020" . +_:Nab11697d04a641bead72e9b322f2075d "Horan,K." . +_:Ne7dcb631091d4bb8941e141c72af99e4 "3000.0"^^ . +_:Nab11697d04a641bead72e9b322f2075d "Sutton,B." . +_:Nab11697d04a641bead72e9b322f2075d "Schultz,M.B." . + + "MT326100.1" . +_:N32e5c6499af9474182743159dbd8dc66 . +_:N0f1c94850031452fb9e57bc8e173983b . +_:N0cc1e5fe34cb47f38b55243793c217d2 "Laboratory Medicine" . +_:N0f1c94850031452fb9e57bc8e173983b . +_:N32e5c6499af9474182743159dbd8dc66 "SARS-CoV-2/human/USA/WA-UW-1805/2020" . +_:N0cc1e5fe34cb47f38b55243793c217d2 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . +_:N0f1c94850031452fb9e57bc8e173983b . + _:N32e5c6499af9474182743159dbd8dc66 . + _:Nfaff6710659a472eb4e6eda4d73c398f . +_:N0cc1e5fe34cb47f38b55243793c217d2 "Greninger,A." . +_:Nfaff6710659a472eb4e6eda4d73c398f "custom v. 2020-03" . + _:Nc272befe5ac240f9bbc5fa64d5b5798d . +_:N0f1c94850031452fb9e57bc8e173983b "MT326100.1" . + _:N0cc1e5fe34cb47f38b55243793c217d2 . +_:N0f1c94850031452fb9e57bc8e173983b "2020-03-22" . +_:Nc272befe5ac240f9bbc5fa64d5b5798d . +_:N0cc1e5fe34cb47f38b55243793c217d2 "Roychoudhury,P." . +_:N0cc1e5fe34cb47f38b55243793c217d2 "Jerome,K." . + _:N0f1c94850031452fb9e57bc8e173983b . +_:N0f1c94850031452fb9e57bc8e173983b . +_:Nfaff6710659a472eb4e6eda4d73c398f . + + "SRR11859129" . +_:Nb906dd9dbe3842a8b0e4b2dc35e8d952 . +_:Nb906dd9dbe3842a8b0e4b2dc35e8d952 "2020-03-05" . + _:Nd2d48d0ba199496ca962b3f9a14f5d07 . +_:N6a2f013aa18844a8864119487196a47b . +_:N48e2114f74af46d3bfd688f547ce62b3 "Laboratory Medicine" . + _:Nb906dd9dbe3842a8b0e4b2dc35e8d952 . +_:N48e2114f74af46d3bfd688f547ce62b3 "University of California San Francisco" . +_:N48e2114f74af46d3bfd688f547ce62b3 "Xianding Deng" . +_:N48e2114f74af46d3bfd688f547ce62b3 "Laboratory Medicine; University of California San Francisco; 600-16th Street; San Francisco; California; USA; Postal code 94158" . +_:N48e2114f74af46d3bfd688f547ce62b3 "SRA1080605" . +_:N3cc3090b2dea438a9f853cd715bbb17a "LIBRARY_STRATEGY: AMPLICON;" . + _:N48e2114f74af46d3bfd688f547ce62b3 . +_:Nb906dd9dbe3842a8b0e4b2dc35e8d952 "SRR11859129" . +_:N48e2114f74af46d3bfd688f547ce62b3 "Laboratory Medicine; University of California San Francisco; 600-16th Street; San Francisco; California; USA; Postal code 94158" . +_:N3cc3090b2dea438a9f853cd715bbb17a . +_:N48e2114f74af46d3bfd688f547ce62b3 "wayne.deng09@gmail.com" . + _:N6a2f013aa18844a8864119487196a47b . + _:N3cc3090b2dea438a9f853cd715bbb17a . +_:Nd2d48d0ba199496ca962b3f9a14f5d07 . +_:N48e2114f74af46d3bfd688f547ce62b3 "PRJNA629889" . +_:Nb906dd9dbe3842a8b0e4b2dc35e8d952 "California Department of Public Health" . + + "MT477842.1" . + _:N2349d0c4c1324438bfce2b8cf2923e5f . +_:N5e860c7dd3ff431285aef5b616a1d5e5 . + _:N54b5f3b0858043529093024c984849f1 . +_:N54b5f3b0858043529093024c984849f1 "Alaska State Virology Laboratory" . +_:N2349d0c4c1324438bfce2b8cf2923e5f . +_:Nae6138493ae34e588af2ee563dbb4fd6 "Sequencher v. 5.1" . +_:N54b5f3b0858043529093024c984849f1 "Deuling,H." . + _:N6ffae132f5fd4ba88848a49a37afdcbb . + _:Nae6138493ae34e588af2ee563dbb4fd6 . +_:N54b5f3b0858043529093024c984849f1 "1051 Sheenjek Dr, Fairbanks, AK 99709, USA" . +_:N6ffae132f5fd4ba88848a49a37afdcbb . +_:N2349d0c4c1324438bfce2b8cf2923e5f "2020-03-23" . +_:N2349d0c4c1324438bfce2b8cf2923e5f "MT477842.1" . + _:N5e860c7dd3ff431285aef5b616a1d5e5 . +_:N54b5f3b0858043529093024c984849f1 "DeRonde,S." . +_:N54b5f3b0858043529093024c984849f1 "Chen,J." . +_:Nae6138493ae34e588af2ee563dbb4fd6 . +_:N5e860c7dd3ff431285aef5b616a1d5e5 "SARS-CoV-2/human/USA/AK034/2020" . +_:N2349d0c4c1324438bfce2b8cf2923e5f . + + "MT810789.1" . +_:N965c0e971450489e9e2008c32c914419 "Pacheco,O.R." . +_:Nd2136f4cf1d9437d92b06bc68efcf897 "MT810789.1" . +_:Nd2136f4cf1d9437d92b06bc68efcf897 "2020-04-29" . + _:Nd2136f4cf1d9437d92b06bc68efcf897 . + _:N965c0e971450489e9e2008c32c914419 . +_:N965c0e971450489e9e2008c32c914419 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . +_:Nc9778b6d151e4eefb7b76bc949251731 "iVar v. 1.2.2" . +_:Nc9778b6d151e4eefb7b76bc949251731 . +_:N965c0e971450489e9e2008c32c914419 "SEARCH Alliance,S.D." . +_:Nd2136f4cf1d9437d92b06bc68efcf897 . + _:N6a219ad8686440d2a41d5af1ac11173b . +_:N965c0e971450489e9e2008c32c914419 "Department of Immunology" . + _:Nc9778b6d151e4eefb7b76bc949251731 . +_:N6a219ad8686440d2a41d5af1ac11173b . +_:N6a219ad8686440d2a41d5af1ac11173b "SARS-CoV-2/human/MEX/SEARCH-1715-TIJ/2020" . + _:Nb146ea521988424d98ccaf89e0680bb0 . +_:Nd2136f4cf1d9437d92b06bc68efcf897 . +_:Nd2136f4cf1d9437d92b06bc68efcf897 . +_:Nb146ea521988424d98ccaf89e0680bb0 . +_:N965c0e971450489e9e2008c32c914419 "Alvarez,S.N." . +_:N965c0e971450489e9e2008c32c914419 "Cota Haros,C.A." . + + "MT262897.1" . +_:N9f74d85ae532401cb88e58e9537bb5ec "Li,Y." . + _:N62a8cb9597fe429996b49319f6dd88ab . +_:N9f74d85ae532401cb88e58e9537bb5ec "Tong,S." . +_:N6c719d288f484e4ca81800a1cba1bf55 "minimap v. 2.17; Sequencher v. 5.4.6" . +_:N9f74d85ae532401cb88e58e9537bb5ec "Hiatt,B." . +_:N9f74d85ae532401cb88e58e9537bb5ec "Tao,Y." . +_:N62a8cb9597fe429996b49319f6dd88ab "MT262897.1" . +_:N9f74d85ae532401cb88e58e9537bb5ec "Gant,J." . + _:N9f74d85ae532401cb88e58e9537bb5ec . +_:N9a9e671cf2e344e285450561b21e3e2a . +_:Nbabec4eb45dd4201891cc5f131eb773b . +_:N9f74d85ae532401cb88e58e9537bb5ec "Wang,H." . +_:N9f74d85ae532401cb88e58e9537bb5ec "Queen,K." . +_:N6c719d288f484e4ca81800a1cba1bf55 . +_:N9a9e671cf2e344e285450561b21e3e2a "SARS-CoV-2/human/USA/WA-NH3/2020" . +_:N62a8cb9597fe429996b49319f6dd88ab . +_:N6c719d288f484e4ca81800a1cba1bf55 "20.0"^^ . +_:N62a8cb9597fe429996b49319f6dd88ab "5' sequence is the sequencing primer used" . +_:N62a8cb9597fe429996b49319f6dd88ab "2020-03-13" . + _:N9a9e671cf2e344e285450561b21e3e2a . +_:N9f74d85ae532401cb88e58e9537bb5ec "Russell,D." . + _:N6c719d288f484e4ca81800a1cba1bf55 . 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. +_:N2ae9fce2e92d433cb357eecf15c949b2 "BPHL" . +_:N22e9412e3e504522873c2102e0b49aad . +_:N2ae9fce2e92d433cb357eecf15c949b2 "Blanton,J." . + _:Na7abcfd276f0495cb120a5dc079b8567 . + _:N22e9412e3e504522873c2102e0b49aad . +_:N2ae9fce2e92d433cb357eecf15c949b2 "FLDOH, 1217 N Pearl St, Jacksonville, FL 32202, USA" . + + "MT520290.1" . +_:Ncf1705955ebb4b1ab09e1e3d6b378c6d . +_:Ncf1705955ebb4b1ab09e1e3d6b378c6d "CLC Genomics Workbench v. 20" . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Seltzer,T.A." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Juarez,A." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Bailey,A.G." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Eason,A.B." . +_:Nda424824914d4724b1cbc645591725bd "MT528610.1" . +_:Nda424824914d4724b1cbc645591725bd . +_:Nda424824914d4724b1cbc645591725bd "2020-04-15" . + _:N841bc21bccf24611a6afbd227f7a652c . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Moorad,R." . +_:Nda424824914d4724b1cbc645591725bd . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "University of North Carolina, 450 West Drive, Chapel Hill, NC 27514, USA" . + _:Nda424824914d4724b1cbc645591725bd . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Vahrson,W." . + _:N7583347c772144b6a650b2251e75de10 . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Thompson,C." . +_:Nda424824914d4724b1cbc645591725bd . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Miller,M.B." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Villamor,F." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Dittmer,D." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Pluta,L.J." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Microbiology & Immunology" . +_:N841bc21bccf24611a6afbd227f7a652c "SARS-CoV-2/human/USA/UNC_200259/2020" . +_:Nda424824914d4724b1cbc645591725bd "The 'collection_date' is estimated (the original date was: 2020-04)" . +_:N841bc21bccf24611a6afbd227f7a652c . +_:Nda424824914d4724b1cbc645591725bd "Dirk Dittmer" . + _:Ncf1705955ebb4b1ab09e1e3d6b378c6d . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "McNamara,R.P." . +_:N6bf8f8a0c9c4464f8f813e8d519edddf "Caro-Vegas,C.P." . 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General Services" . +_:N1f5c9f12600a4412a035d9d64ab290b4 "Division of Consolidated Laboratory Services, 600 N 5th Street, Richmond, VA 23219, USA" . +_:N05c020b08d9a4951b96c313ee53c2e74 . + _:Na167b8311537488c83127c4e23d4a55e . + _:N1f5c9f12600a4412a035d9d64ab290b4 . +_:N1f5c9f12600a4412a035d9d64ab290b4 "Fink,L." . +_:N05c020b08d9a4951b96c313ee53c2e74 "MT482117.1" . +_:N05c020b08d9a4951b96c313ee53c2e74 . +_:Na167b8311537488c83127c4e23d4a55e . + _:Na081a334b02741c09db43f3fef508c34 . +_:Na167b8311537488c83127c4e23d4a55e "minimap2 v. 2.17; ivar v. 1.1" . +_:N823462fc31624d8ca5067d1033567cd6 "SARS-CoV-2/human/USA/VA-DCLS-0131/2020" . +_:N05c020b08d9a4951b96c313ee53c2e74 "2020-04-15" . +_:N05c020b08d9a4951b96c313ee53c2e74 "The 'collection_date' is estimated (the original date was: 2020-04)" . +_:Na081a334b02741c09db43f3fef508c34 . + _:N05c020b08d9a4951b96c313ee53c2e74 . + _:N823462fc31624d8ca5067d1033567cd6 . + + "MT246473.1" . + _:N355eb535554d4ec8a8c1d1695d455694 . 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Rd, San Diego, CA 92122, USA" . +_:Nc0b112c6ee0d4b0d98f3c77849699f88 "SEARCH Alliance,S.D." . + _:Nf2f4754f1ed5496d9ff148dfb22db3e7 . +_:Nc0b112c6ee0d4b0d98f3c77849699f88 "Austin,B." . +_:Nc0b112c6ee0d4b0d98f3c77849699f88 "Basler,T." . +_:N7524ff1932654eeda48f2fd928c06279 . + _:N29e49e15811b490fac496430506e98aa . +_:N7524ff1932654eeda48f2fd928c06279 "MT810542.1" . +_:Nc0b112c6ee0d4b0d98f3c77849699f88 "Shephard,J." . +_:N7524ff1932654eeda48f2fd928c06279 "2020-04-02" . +_:N3ce26b6797c54d599d59f176ec76c644 . +_:Nc0b112c6ee0d4b0d98f3c77849699f88 "Department of Immunology" . +_:N7524ff1932654eeda48f2fd928c06279 . + _:Nc0b112c6ee0d4b0d98f3c77849699f88 . +_:Nf2f4754f1ed5496d9ff148dfb22db3e7 . +_:N29e49e15811b490fac496430506e98aa . +_:N29e49e15811b490fac496430506e98aa "iVar v. 1.2.2" . +_:Nf2f4754f1ed5496d9ff148dfb22db3e7 "SARS-CoV-2/human/USA/SEARCH-1677-SAN/2020" . + + "MT322423.1" . + _:N81a23d1b77f84db89c7db0be9bbc7672 . +_:N81a23d1b77f84db89c7db0be9bbc7672 "Paden,C.R." . 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"SARS-CoV-2/human/USA/WA-NH5/2020" . +_:N81a23d1b77f84db89c7db0be9bbc7672 "Li,Y." . +_:N9c0bc22378074665b93f2bc3cc35b62e . +_:N81a23d1b77f84db89c7db0be9bbc7672 "Wang,H." . +_:N7f21501a8f3f4583a31f69f54d5f0c33 . +_:N81a23d1b77f84db89c7db0be9bbc7672 "Queen,K." . +_:N81a23d1b77f84db89c7db0be9bbc7672 "Jacobs,J." . +_:N81a23d1b77f84db89c7db0be9bbc7672 "Gant,J." . +_:N9c0bc22378074665b93f2bc3cc35b62e "2020-03-13" . + + "SRR11858003" . +_:Nae937a601c524d829c213bc610d620f5 "Virginia Division of Consolidated Laboratory Services Sequencing Submission Group" . + _:Nf0723833ff7645ed9ce9ed1bb3a0060a . +_:Nf0723833ff7645ed9ce9ed1bb3a0060a "2020-04-15" . +_:N16e0c3479cf04bd1a9b8ec75907d47c7 . +_:Nf0723833ff7645ed9ce9ed1bb3a0060a "Virginia DCLS" . +_:Nf0723833ff7645ed9ce9ed1bb3a0060a . +_:Nae937a601c524d829c213bc610d620f5 "Lauren.turner@dgs.virginia.gov" . +_:Nf0723833ff7645ed9ce9ed1bb3a0060a . +_:Nae937a601c524d829c213bc610d620f5 "Virginia Division of Consolidated Laboratories" . 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+_:Nc1783f63a0b74affa3ad283a5016bd0c . +_:N0f62f1bb19774ccea4e37af21ac0683e . + _:N9fa4c6a2aa964f60aaf6e40701b1a98a . + _:Nbfd7b2336b5944fcb07b9103e9d17f71 . +_:N9fa4c6a2aa964f60aaf6e40701b1a98a "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . +_:N0f62f1bb19774ccea4e37af21ac0683e "MT628146.1" . + _:N0f62f1bb19774ccea4e37af21ac0683e . +_:Nbfd7b2336b5944fcb07b9103e9d17f71 . + _:Nc1783f63a0b74affa3ad283a5016bd0c . +_:N9fa4c6a2aa964f60aaf6e40701b1a98a "CZB Cliahub Consortium,C.C.C." . +_:N0f62f1bb19774ccea4e37af21ac0683e . +_:N0f62f1bb19774ccea4e37af21ac0683e . +_:N4f58dd1eb71e4838a34a00a1dd861155 . + _:N4f58dd1eb71e4838a34a00a1dd861155 . +_:N9fa4c6a2aa964f60aaf6e40701b1a98a "Division of Infectious Diseases" . +_:N0f62f1bb19774ccea4e37af21ac0683e . +_:N4f58dd1eb71e4838a34a00a1dd861155 "minimap2 v. 2.17; ivar v. 1.2" . +_:N0f62f1bb19774ccea4e37af21ac0683e "2020-03-28" . +_:Nbfd7b2336b5944fcb07b9103e9d17f71 "SARS-CoV-2/human/USA/CA-CZB-1443/2020" . + + "MT451790.1" . +_:N62f95a01468a45da9f4cd628139698d2 . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Horan,K." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Sait,M." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Lane,C.R." . + _:N62f95a01468a45da9f4cd628139698d2 . +_:N62f95a01468a45da9f4cd628139698d2 . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Caly,L." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Easton,M." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Ballard,S.A." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Howden,B.P." . +_:Nc7d12167f10e4415b6c2d74ff4c4c00f . +_:Ne407ff59610b4f48abb9924319fee0e1 . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Druce,J." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Seemann,T." . + _:Ne407ff59610b4f48abb9924319fee0e1 . + _:Nc7d12167f10e4415b6c2d74ff4c4c00f . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Catton,M." . +_:Ne407ff59610b4f48abb9924319fee0e1 "minimap2 v. 2.17-r941; samtools v. 1.10; ivar v. 1.2.1" . +_:N3bdf09cb35544ff69c74347296c3141c . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Schultz,M.B." . +_:Ne407ff59610b4f48abb9924319fee0e1 "3000.0"^^ . +_:N73a5f0c21ba545029b8a34d8d9baa418 "van Diemen,A." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Alpren,C." . +_:N3bdf09cb35544ff69c74347296c3141c "SARS-CoV-2/human/AUS/VIC1186/2020" . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Williamson,D.A." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Hoang,T." . + _:N3bdf09cb35544ff69c74347296c3141c . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Sutton,B." . + _:N73a5f0c21ba545029b8a34d8d9baa418 . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Sherry,N.L." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Dougal,S." . +_:N62f95a01468a45da9f4cd628139698d2 "2020-04-11" . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Duchene,S." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Stinear,T.P." . +_:N73a5f0c21ba545029b8a34d8d9baa418 "Goncalves da Silva,A." . +_:N62f95a01468a45da9f4cd628139698d2 "MT451790.1" . + + "MT598174.1" . +_:Ndda620b0a68d49dc9c3bad836082f951 "MT598174.1" . +_:Nf32ca7d6b0804ee89bb9d95e3627a724 . + _:Ndda620b0a68d49dc9c3bad836082f951 . + _:Nb7ec17d35d2f4cbe91311265c6fc79fb . +_:N46a71a3a87eb404c96bfd9ba257e38f4 "The Scripps Research Institute, 10550 N Torrey Pines Rd, San Diego, CA 92122, USA" . +_:N3a85ea37adab4d24813dd8cdae65e59d "SARS-CoV-2/human/USA/SEARCH-0017-SAN/2020" . + _:N46a71a3a87eb404c96bfd9ba257e38f4 . +_:N46a71a3a87eb404c96bfd9ba257e38f4 "SEARCH Alliance,S.D." . +_:Ndda620b0a68d49dc9c3bad836082f951 "2020-03-24" . +_:Ndda620b0a68d49dc9c3bad836082f951 . +_:Ndda620b0a68d49dc9c3bad836082f951 . + _:Nf32ca7d6b0804ee89bb9d95e3627a724 . +_:Ndda620b0a68d49dc9c3bad836082f951 . + _:N3a85ea37adab4d24813dd8cdae65e59d . +_:Nb7ec17d35d2f4cbe91311265c6fc79fb . +_:Nf32ca7d6b0804ee89bb9d95e3627a724 "iVar v. 1.2" . +_:N46a71a3a87eb404c96bfd9ba257e38f4 "Department of Immunology" . +_:N3a85ea37adab4d24813dd8cdae65e59d . + + "MT520187.1" . +_:N21b9f7be343b41808ac58020af88436a "Pierce,V." . + _:N21b9f7be343b41808ac58020af88436a . +_:N0e63487296cd447b867fd9d0e36192b8 "2020-04-07" . +_:N21b9f7be343b41808ac58020af88436a "Flowers,K." . +_:N21b9f7be343b41808ac58020af88436a "Siddle,K.J." . +_:Nb087f0ad2244444ab465d5615044f563 "2092.015423"^^ . +_:N21b9f7be343b41808ac58020af88436a "Adams,G." . +_:N21b9f7be343b41808ac58020af88436a "Lemieux,J.E." . +_:N21b9f7be343b41808ac58020af88436a "Lin,A.E." . +_:Nb087f0ad2244444ab465d5615044f563 . +_:N21b9f7be343b41808ac58020af88436a "Slater,D." . +_:N21b9f7be343b41808ac58020af88436a "Gnirke,A." . +_:N0e63487296cd447b867fd9d0e36192b8 "MT520187.1" . +_:N21b9f7be343b41808ac58020af88436a "Gallagher,G." . +_:N21b9f7be343b41808ac58020af88436a "Harris,J." . +_:Nb087f0ad2244444ab465d5615044f563 "https://github.com/broadinstitute/viral-pipelines/blob/master/pipes/WDL/workflows/assemble_refbased.wdl v. 2.0.21.5-rc6" . +_:N21b9f7be343b41808ac58020af88436a "Chaluvadi,S." . + _:N0e63487296cd447b867fd9d0e36192b8 . +_:N502a6aa31d02465cb40d403c3fa40ca4 . +_:N21b9f7be343b41808ac58020af88436a "Carter,A." . +_:N0e63487296cd447b867fd9d0e36192b8 . +_:N21b9f7be343b41808ac58020af88436a "Rudy,M." . +_:N21b9f7be343b41808ac58020af88436a "Park,D.J." . +_:N21b9f7be343b41808ac58020af88436a "Chapman,S.B." . +_:N0e63487296cd447b867fd9d0e36192b8 . +_:N21b9f7be343b41808ac58020af88436a "Bauer,M." . +_:N21b9f7be343b41808ac58020af88436a "Gladden-Young,A." . +_:N21b9f7be343b41808ac58020af88436a "Reilly,S." . +_:N988091dbc27c4515a504087e426fea99 "SARS-CoV-2/human/USA/MA_MGH_00708/2020" . + _:N502a6aa31d02465cb40d403c3fa40ca4 . +_:N21b9f7be343b41808ac58020af88436a "DeRuff,K." . +_:N21b9f7be343b41808ac58020af88436a "Ryan,E." . +_:N21b9f7be343b41808ac58020af88436a "Turbett,S." . +_:N21b9f7be343b41808ac58020af88436a "Cerrato,F." . +_:N21b9f7be343b41808ac58020af88436a "Branda,J." . + _:Nb087f0ad2244444ab465d5615044f563 . +_:N21b9f7be343b41808ac58020af88436a "LaRocque,R." . +_:N21b9f7be343b41808ac58020af88436a "Rosenberg,E." . +_:N21b9f7be343b41808ac58020af88436a "Normandin,E." . +_:N988091dbc27c4515a504087e426fea99 . +_:N0e63487296cd447b867fd9d0e36192b8 . + _:N988091dbc27c4515a504087e426fea99 . +_:N21b9f7be343b41808ac58020af88436a "Loreth,C." . +_:N21b9f7be343b41808ac58020af88436a "Tomkins-Tinch,C." . +_:N21b9f7be343b41808ac58020af88436a "Birren,B.W." . +_:N21b9f7be343b41808ac58020af88436a "Smole,S." . +_:N21b9f7be343b41808ac58020af88436a "Lagerborg,K." . +_:N21b9f7be343b41808ac58020af88436a "Anahtar,M." . +_:N21b9f7be343b41808ac58020af88436a "MacInnis,B.L." . +_:N21b9f7be343b41808ac58020af88436a "Neumann,A." . +_:N0e63487296cd447b867fd9d0e36192b8 "Massachusetts General Hospital" . +_:N21b9f7be343b41808ac58020af88436a "Shaw,B." . +_:N21b9f7be343b41808ac58020af88436a "Cusick,C." . +_:N21b9f7be343b41808ac58020af88436a "Sabeti,P.C." . + + "MT577632.1" . +_:N47a36b8e17554b6baa1a5d0fb06d850f . +_:N640cab1def0a4b68bd66b4d77b815e45 "SARS-CoV-2/human/USA/FL-BPHL-0076/2020" . + _:N4f26993e69a74a7bb846d7fe28095100 . +_:Nadcf24b0d4e94d92b6820084c7acf9ae "Blanton,J." . + _:Nbcef5517302e429a93c7515849b965fb . +_:Nbcef5517302e429a93c7515849b965fb . +_:Nbcef5517302e429a93c7515849b965fb "MT577632.1" . +_:N640cab1def0a4b68bd66b4d77b815e45 . +_:Nbcef5517302e429a93c7515849b965fb . +_:Nadcf24b0d4e94d92b6820084c7acf9ae "Molecular" . +_:Nadcf24b0d4e94d92b6820084c7acf9ae "Florida Bureau of Public Health Laboratories, 1217 N. Pearl Street, Jacksonville, FL 32202, USA" . +_:Nadcf24b0d4e94d92b6820084c7acf9ae "Schmedes,S." . +_:Nbcef5517302e429a93c7515849b965fb "2020-04-29" . +_:N47a36b8e17554b6baa1a5d0fb06d850f "bwa v. 0.7.17; ivar v. 1.2.2" . + _:N47a36b8e17554b6baa1a5d0fb06d850f . + _:Nadcf24b0d4e94d92b6820084c7acf9ae . +_:N4f26993e69a74a7bb846d7fe28095100 . + _:N640cab1def0a4b68bd66b4d77b815e45 . + + "MT461657.1" . +_:Na8628ba970df424d9cf367531e5f444e "Greninger,A." . + _:N0871002af23348d19fe5ce517daec03c . + _:Ne343b7022ab54c118a6b6869526ff733 . +_:Ne343b7022ab54c118a6b6869526ff733 "SARS-CoV-2/human/USA/WA-UW-6546/2020" . +_:N06fe00dd03894a2b99c084fe45d9a429 "2020-04-04" . +_:Na8628ba970df424d9cf367531e5f444e "Laboratory Medicine" . +_:Na8628ba970df424d9cf367531e5f444e "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . + _:N6ecf8bf11ba44866b2101f612ebb19c2 . +_:N0871002af23348d19fe5ce517daec03c . + _:Na8628ba970df424d9cf367531e5f444e . 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+_:N9473bd5b6dd54559b751c237339ced74 . +_:N9473bd5b6dd54559b751c237339ced74 . + _:N27c6c201ceba44e2a72903a8b84be288 . +_:N27c6c201ceba44e2a72903a8b84be288 . +_:N9473bd5b6dd54559b751c237339ced74 "MT358727.1" . +_:Ncba9a88f96a545058429f658c45ecfd7 "Laboratory Medicine" . + _:N9473bd5b6dd54559b751c237339ced74 . +_:N74a9ec4fdf78417e97f3b090cd622b1c "SARS-CoV-2/human/USA/WA-UW-3963/2020" . +_:Ncba9a88f96a545058429f658c45ecfd7 "Greninger,A." . +_:N4a984956d5334e3787e08f6d0fb4652c "custom pipeline v. 2020-03" . +_:N9473bd5b6dd54559b751c237339ced74 "2020-03-30" . +_:N9473bd5b6dd54559b751c237339ced74 . + + "MT827214.1" . +_:Ne486b76e085b4aae9a44278305e49d54 "SARS-CoV-2/human/USA/MD-MDH-0048/2020" . +_:N3026fc6c55ac4c65ab209cb90c59751a "CSL" . +_:Ne214edb672c04acea280e19cb3071dc0 "MT827214.1" . +_:Ne214edb672c04acea280e19cb3071dc0 . +_:Nbf42080bccc5498ea1df9a5a4e8aa307 "CLC Genomics v. 20" . +_:Ne214edb672c04acea280e19cb3071dc0 . +_:N821ab9d2ab18467e8e7ca3756b37f8f9 . + _:N821ab9d2ab18467e8e7ca3756b37f8f9 . + _:Ne486b76e085b4aae9a44278305e49d54 . +_:Ne214edb672c04acea280e19cb3071dc0 "2020-04-12" . + _:Nbf42080bccc5498ea1df9a5a4e8aa307 . + _:N3026fc6c55ac4c65ab209cb90c59751a . +_:Ne486b76e085b4aae9a44278305e49d54 . + _:Ne214edb672c04acea280e19cb3071dc0 . +_:N3026fc6c55ac4c65ab209cb90c59751a "Keller,E." . +_:N3026fc6c55ac4c65ab209cb90c59751a "Maryland Department of Health, 1, 1, MD 1, USA" . +_:Ne214edb672c04acea280e19cb3071dc0 . +_:Nbf42080bccc5498ea1df9a5a4e8aa307 . + + "MT012098.1" . + _:N29ad508975ae49fc98faa188325b16ba . + _:Nedc810fda11145b6bff9cfbfa7adbbf3 . +_:Nedc810fda11145b6bff9cfbfa7adbbf3 . + _:N4a80301fee854040bf4289411064d5b8 . +_:N29ad508975ae49fc98faa188325b16ba . +_:N4a80301fee854040bf4289411064d5b8 "Kallio-Kokko,H." . +_:N15e8803b9ad6400eb7f4fc9d0a26d34f "20.0"^^ . +_:N15e8803b9ad6400eb7f4fc9d0a26d34f "Megahit v. 1.1.1.3; BWA-MEM v. 0.7.17" . +_:N74773778d804465d839dfbb1a23eca2a . +_:N4a80301fee854040bf4289411064d5b8 "Peltola,J." . +_:Nedc810fda11145b6bff9cfbfa7adbbf3 "nCoV-FIN-29-Jan-2020" . +_:N15e8803b9ad6400eb7f4fc9d0a26d34f . +_:N74773778d804465d839dfbb1a23eca2a "2020-01-29" . + _:N15e8803b9ad6400eb7f4fc9d0a26d34f . +_:N4a80301fee854040bf4289411064d5b8 "Vapalahti,O." . +_:N4a80301fee854040bf4289411064d5b8 "Broas,M." . +_:N4a80301fee854040bf4289411064d5b8 "Smura,T." . +_:N74773778d804465d839dfbb1a23eca2a . +_:N74773778d804465d839dfbb1a23eca2a "MT020781.2" . + _:N74773778d804465d839dfbb1a23eca2a . +_:N4a80301fee854040bf4289411064d5b8 "Kuivanen,S." . + + "MT451042.1" . + _:N0fb24d3ae8d043d5aaba7a32f9459df7 . +_:N13bb39c60b1f4f5aab62da01e6d5d6fa . + _:Naacca19cc7fe409d8fe7bc4d078930b9 . +_:N0fb24d3ae8d043d5aaba7a32f9459df7 "Virginia Division of Consolidated Laboratory Services Sequencing Submission Group, 500 North 5th Street, Richmond, VA 23219, USA" . +_:N948c3b6f09224caa9cebd5cf3f16e9ba . +_:N13bb39c60b1f4f5aab62da01e6d5d6fa "The 'collection_date' is estimated (the original date was: 2020-04)" . + _:N948c3b6f09224caa9cebd5cf3f16e9ba . +_:N13bb39c60b1f4f5aab62da01e6d5d6fa "MT609570.1" . +_:Nf8458f20b0af417784f7d9840a0c2148 "SARS-CoV-2/human/USA/VA-DCLS-0304/2020" . + _:Nf8458f20b0af417784f7d9840a0c2148 . +_:Naacca19cc7fe409d8fe7bc4d078930b9 . +_:N948c3b6f09224caa9cebd5cf3f16e9ba "minimap2 v. 2.17; ivar v. 1.1" . +_:N0fb24d3ae8d043d5aaba7a32f9459df7 "Fink,L." . +_:N13bb39c60b1f4f5aab62da01e6d5d6fa "2020-04-15" . +_:N0fb24d3ae8d043d5aaba7a32f9459df7 "Department of General Services Division of Consolidated Laboratory Services" . +_:N13bb39c60b1f4f5aab62da01e6d5d6fa . +_:Nf8458f20b0af417784f7d9840a0c2148 . + _:N13bb39c60b1f4f5aab62da01e6d5d6fa . + + "MT886446.1" . +_:N1fb5f0afd362472bb1400a767a10da64 "MT886446.1" . +_:N1fb5f0afd362472bb1400a767a10da64 . +_:Ne2d817d57dc24aa1afd8d27971cd710f "Epidemiology of Microbial Diseases" . +_:N39161a51e91f460f86fa3277c2f5b73c . + _:Ncdd2fdb856ee4877b375ee71b6f49187 . +_:Naf82c81ce6ed43178be580b8dcaefa7d . +_:N39161a51e91f460f86fa3277c2f5b73c "Artic Network (bwa, SAMtools, nanopolish) v. 2020" . +_:N1fb5f0afd362472bb1400a767a10da64 . + _:N1fb5f0afd362472bb1400a767a10da64 . +_:N1fb5f0afd362472bb1400a767a10da64 . +_:N1fb5f0afd362472bb1400a767a10da64 "2020-05-12" . + _:N39161a51e91f460f86fa3277c2f5b73c . +_:Ne2d817d57dc24aa1afd8d27971cd710f "Fauver,J.R." . +_:Ne2d817d57dc24aa1afd8d27971cd710f "Yale School of Public Health, 60 College Street, New Haven, CT 06510, USA" . +_:Ncdd2fdb856ee4877b375ee71b6f49187 . + _:Naf82c81ce6ed43178be580b8dcaefa7d . +_:Ncdd2fdb856ee4877b375ee71b6f49187 "SARS-CoV-2/human/USA/Yale-333/2020" . + _:Ne2d817d57dc24aa1afd8d27971cd710f . + + "MT412202.1" . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sridhar,S.H." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Paniz-Mondolfi,A." . +_:N9a2b14b38381458d88fad7de39355425 . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Garcia-Sastre,A." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Obla,A." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sebra,R." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Aberg,J." . + _:N8105232d8b204f26a316831290eb924f . + _:N3961c374076b4b96ba32d3e4b7d8fba7 . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Hernandez,M." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Smith,M." . +_:N8105232d8b204f26a316831290eb924f . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sullivan,M." . +_:N9a2b14b38381458d88fad7de39355425 "MT371002.1" . +_:N9a2b14b38381458d88fad7de39355425 "passage_history: sequence was derived directly from the original sample material" . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Simon,V." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Dutta,J." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Soto,J." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "van Bakel,H." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Fabre,S." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Albrecht,R." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Khan,Z." . + _:N6ad9c0fad4704cc4a753cdbc22a317d2 . +_:N9a2b14b38381458d88fad7de39355425 . + _:N84926d34293a49cd855d10d798770490 . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Wang,Y.C." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Sordillo,E." . +_:N8105232d8b204f26a316831290eb924f "Minimap2, Pilon v. 2.17-r941, v.1.23" . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Patel,G." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Gonzalez-Reiche,A.S." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Krammer,F." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Polanco,J." . +_:N9a2b14b38381458d88fad7de39355425 . +_:N84926d34293a49cd855d10d798770490 . +_:N3961c374076b4b96ba32d3e4b7d8fba7 . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Gitman,M." . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Albuquerque,B." . +_:N9a2b14b38381458d88fad7de39355425 "2020-03-22" . +_:N3961c374076b4b96ba32d3e4b7d8fba7 "SARS-CoV-2/human/USA/NY-PV09200/2020" . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Liu,W." . + _:N9a2b14b38381458d88fad7de39355425 . +_:N6ad9c0fad4704cc4a753cdbc22a317d2 "Miorin,L." . + + "MT834064.1" . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Thompson,M." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Brandstetter,E." . +_:N9edf8b2b8c3340a6bf1e69fe03b57f39 . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Pelle,B." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Truong,M." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Gautom,R." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Lacombe,K." . + _:N7ccaccf10f9f4e20b2037b1e11c35728 . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Richardson,M." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Seattle Flu Study, 1959 NE Pacific Street, Seattle, WA 98195, USA" . +_:Ndf36723f8676436bbf4bd5a0cde76170 . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Lutz,B.R." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "University of Washington Medical Center" . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Adler,A." . + _:N9edf8b2b8c3340a6bf1e69fe03b57f39 . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Nickerson,D.A." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Dykema,P." . + _:Ndf36723f8676436bbf4bd5a0cde76170 . +_:N9edf8b2b8c3340a6bf1e69fe03b57f39 "MT834064.1" . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Bedford,T." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Boeckh,M." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Shendure,J." . +_:N7ccaccf10f9f4e20b2037b1e11c35728 . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Fay,K." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Ilcisin,M." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Frazar,C.D." . +_:N70c92ff1b33947619077ccd9487da7ef "SARS-CoV-2/human/USA/WA-S1768/2020" . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Rieder,M.J." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Hiatt,B." . +_:N9edf8b2b8c3340a6bf1e69fe03b57f39 "2020-06-01" . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Han,P.D." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Lee,J." . +_:N9edf8b2b8c3340a6bf1e69fe03b57f39 . +_:N70c92ff1b33947619077ccd9487da7ef . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Sibley,T.R." . + _:Na04128b74a4c4887a3ba7fffd134e1ba . + _:N70c92ff1b33947619077ccd9487da7ef . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Chu,H.Y." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Lindquist,S." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Starita,L.M." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Englund,J.A." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Melly,G." . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Famulare,M." . +_:Ndf36723f8676436bbf4bd5a0cde76170 "https://github.com/seattleflu/assembly v. June-2020" . +_:Na04128b74a4c4887a3ba7fffd134e1ba "Wolf,C.R." . +_:N9edf8b2b8c3340a6bf1e69fe03b57f39 . + + "MT252792.1" . +_:N988b4896fcb7443a96bbde4d874d15c3 "SARS-CoV-2/human/USA/PC00101P/2020" . +_:N46eb7b211cdf4f22a689b5c2d220a3c4 "2020-03-11" . +_:N6052b653fd0548fea3bb3a3304c603b4 "Zeller,M." . + _:N988b4896fcb7443a96bbde4d874d15c3 . +_:N46eb7b211cdf4f22a689b5c2d220a3c4 . +_:N6052b653fd0548fea3bb3a3304c603b4 "Department of Immunology" . +_:Ne57ca47ae3754c93b83574b2659e0a8a . +_:N6052b653fd0548fea3bb3a3304c603b4 "Andersen,K." . +_:N6052b653fd0548fea3bb3a3304c603b4 "Anderson,C." . +_:N6052b653fd0548fea3bb3a3304c603b4 "Nicholson,L." . +_:N6052b653fd0548fea3bb3a3304c603b4 "Klitting,R." . + _:N6c302c33a5f64c5d92d54cf39c099d8f . +_:N6052b653fd0548fea3bb3a3304c603b4 "Gangavarapu,K." . +_:N46eb7b211cdf4f22a689b5c2d220a3c4 . +_:N6c302c33a5f64c5d92d54cf39c099d8f "ivar v. 1.1" . +_:N46eb7b211cdf4f22a689b5c2d220a3c4 "MT192765.1" . +_:N6052b653fd0548fea3bb3a3304c603b4 "Spencer,E." . +_:N6c302c33a5f64c5d92d54cf39c099d8f . +_:N988b4896fcb7443a96bbde4d874d15c3 . + _:Ne57ca47ae3754c93b83574b2659e0a8a . + _:N6052b653fd0548fea3bb3a3304c603b4 . +_:N6052b653fd0548fea3bb3a3304c603b4 "The Scripps Research Institute, 10550 N Torrey Pines Rd, La Jolla, CA 92037-1000, USA" . +_:N6c302c33a5f64c5d92d54cf39c099d8f "3516.0"^^ . +_:N6052b653fd0548fea3bb3a3304c603b4 "Robles-Sikisaka,R." . + _:N46eb7b211cdf4f22a689b5c2d220a3c4 . + + "SRR11597213" . +_:N9b7c0568f8294e169da406fe1bd49688 . +_:N954157b4cbdb4d73b316e242cc709043 "SH0123" . +_:N43989ac7235f4b12851c16e6d078fb14 "2020-02-14" . + _:N43989ac7235f4b12851c16e6d078fb14 . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "SRA1068259" . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "PRJNA627662" . +_:N43989ac7235f4b12851c16e6d078fb14 . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "2. National Research Center for Translational Medicine (Shanghai); Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine; 197 RuiJin Er Rd; Shanghai; China; Postal code 200025" . +_:N43989ac7235f4b12851c16e6d078fb14 "Shanghai Public Health Clinical Center, Fudan University, Shanghai, China" . +_:N43989ac7235f4b12851c16e6d078fb14 "SRR11597213" . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "YUN TAN" . + _:N8e2dc9292b2e4248ae1c4e3473b52420 . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "steventan@sjtu.edu.cn" . +_:N954157b4cbdb4d73b316e242cc709043 . +_:Nc3a23b6c44da44e19fff35d1fb6019df . + _:N954157b4cbdb4d73b316e242cc709043 . +_:N43989ac7235f4b12851c16e6d078fb14 . + _:Nc3a23b6c44da44e19fff35d1fb6019df . + _:N9b7c0568f8294e169da406fe1bd49688 . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "Ruijin Hospital Affiliated to Shanghai Jiao Tong University School of Medicine" . +_:Nc3a23b6c44da44e19fff35d1fb6019df "LIBRARY_STRATEGY: AMPLICON;" . +_:N8e2dc9292b2e4248ae1c4e3473b52420 "2. National Research Center for Translational Medi" . + + "MT461668.1" . +_:N501d566159f1401a8ddd0085530a70cf "Greninger,A." . +_:N3a534b3cc8f94420a25e4c65da5ead05 . +_:N3a534b3cc8f94420a25e4c65da5ead05 . +_:N501d566159f1401a8ddd0085530a70cf "Laboratory Medicine" . +_:N19632100e5274654a8de47f8b80a79ae "custom pipeline v. 2020-03" . +_:N3a534b3cc8f94420a25e4c65da5ead05 "MT461668.1" . +_:N9bd518939b6e4cb892182e6e8728fe6f "SARS-CoV-2/human/USA/CT-UW-6576/2020" . +_:N501d566159f1401a8ddd0085530a70cf "Roychoudhury,P." . +_:N501d566159f1401a8ddd0085530a70cf "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . +_:N19632100e5274654a8de47f8b80a79ae . + _:N9bd518939b6e4cb892182e6e8728fe6f . +_:N9bd518939b6e4cb892182e6e8728fe6f . + _:N3a534b3cc8f94420a25e4c65da5ead05 . +_:N501d566159f1401a8ddd0085530a70cf "Jerome,K." . + _:N19632100e5274654a8de47f8b80a79ae . + _:N501d566159f1401a8ddd0085530a70cf . + _:Nec760cc63fc645b6881a18d94c21c0fd . +_:N3a534b3cc8f94420a25e4c65da5ead05 "2020-04-02" . +_:Nec760cc63fc645b6881a18d94c21c0fd . +_:N3a534b3cc8f94420a25e4c65da5ead05 . +_:N3a534b3cc8f94420a25e4c65da5ead05 . + + "MT252760.1" . +_:N2703396be0b148c2aedf473a3170b04a . + _:N2703396be0b148c2aedf473a3170b04a . +_:N77ac24bf17384f9d97f805cbefe2e151 "SARS-CoV-2/human/USA/WA-UW144/2020" . +_:N1eb4f334b2c3430ba8f1643f70ce2295 "Greninger,A." . + _:N77ac24bf17384f9d97f805cbefe2e151 . +_:N1eb4f334b2c3430ba8f1643f70ce2295 "Roychoudhury,P." . +_:N2703396be0b148c2aedf473a3170b04a . +_:N2703396be0b148c2aedf473a3170b04a "The 'collection_date' is estimated (the original date was: 2020)" . + _:N557b5f16d8694302839c537b9a8882a9 . +_:N1eb4f334b2c3430ba8f1643f70ce2295 "University of Washington, 1100 Fairview Ave N, PO Box 19024, E5-110, Seattle, WA 98109, USA" . +_:N1eb4f334b2c3430ba8f1643f70ce2295 "Laboratory Medicine" . + _:Nee3045575279448aac7cf38f8140bac8 . +_:Nee3045575279448aac7cf38f8140bac8 . +_:N77ac24bf17384f9d97f805cbefe2e151 . +_:N557b5f16d8694302839c537b9a8882a9 . +_:N2703396be0b148c2aedf473a3170b04a "2020-01-15" . + _:N1eb4f334b2c3430ba8f1643f70ce2295 . +_:N1eb4f334b2c3430ba8f1643f70ce2295 "Jerome,K." . +_:N2703396be0b148c2aedf473a3170b04a "MT252760.1" . +_:Nee3045575279448aac7cf38f8140bac8 "custom pipeline v. 2020-03" . + + "MT632944.1" . + _:N035b8f13f2d14f4c83842692fbfa5602 . +_:Ne3e263d980e04eea8d0a2e2409b13a85 . +_:N3aa9dda01e7a4c71bf8242f038777e70 . +_:N035b8f13f2d14f4c83842692fbfa5602 "2020-05-11" . +_:Nb63c9d87086049afb9df61d0ce416e07 "SARS-CoV-2/human/USA/CA-CZB-1549/2020" . +_:N4ec7021e959f48ef9829e197b7753d8c "Department of Medicine, CZ Biohub, UCSF, 499 Illinois St, San Francisco, CA 94158, USA" . +_:N3aa9dda01e7a4c71bf8242f038777e70 "minimap2 v. 2.17; ivar v. 1.2" . +_:Nb63c9d87086049afb9df61d0ce416e07 . +_:N035b8f13f2d14f4c83842692fbfa5602 . +_:N035b8f13f2d14f4c83842692fbfa5602 "MT628217.1" . +_:N035b8f13f2d14f4c83842692fbfa5602 . +_:N035b8f13f2d14f4c83842692fbfa5602 . + _:N4ec7021e959f48ef9829e197b7753d8c . + _:Ne3e263d980e04eea8d0a2e2409b13a85 . + _:N3aa9dda01e7a4c71bf8242f038777e70 . +_:N4ec7021e959f48ef9829e197b7753d8c "Division of Infectious Diseases" . +_:N035b8f13f2d14f4c83842692fbfa5602 . + _:Nb63c9d87086049afb9df61d0ce416e07 . +_:N4ec7021e959f48ef9829e197b7753d8c "CZB Cliahub Consortium,C.C.C." . + + "MT558663.1" . +_:N371ec305967249c3abf25e20c89b744b "Karakasiliotis,I." . + _:N52ad0ec43a1044a9a9af428e9f889ee5 . +_:N99a3c19ed6344fe5b25312a78aededa0 "SARS-CoV-2/human/GRC/136_32338/2020" . + _:N99a3c19ed6344fe5b25312a78aededa0 . +_:N52ad0ec43a1044a9a9af428e9f889ee5 . +_:N371ec305967249c3abf25e20c89b744b "Kassela,K." . +_:N371ec305967249c3abf25e20c89b744b "Stavropoulou,A." . +_:N99a3c19ed6344fe5b25312a78aededa0 . +_:N371ec305967249c3abf25e20c89b744b "Dovrolis,N." . +_:N59a54058f03345d7bba7615bae3a8be6 . +_:N371ec305967249c3abf25e20c89b744b "Froukala,E." . +_:N52ad0ec43a1044a9a9af428e9f889ee5 "MT459852.1" . +_:N371ec305967249c3abf25e20c89b744b "Spanakis,N." . +_:N371ec305967249c3abf25e20c89b744b "Bampali,M." . +_:N371ec305967249c3abf25e20c89b744b "Democritus University of Thrace, Alexandroupolis, 68100, Department of Medicine, National and Kapodistrian University of Athens, University Campus, Athens 11527, Greece" . +_:N52ad0ec43a1044a9a9af428e9f889ee5 "2020-03-11" . +_:N384f007008c24f6bab605242ca1c78f2 . +_:N371ec305967249c3abf25e20c89b744b "Veletza,S." . + _:N384f007008c24f6bab605242ca1c78f2 . +_:N59a54058f03345d7bba7615bae3a8be6 "Iterative Refinement Meta-Assembler (IRMA) v. v0.6.1" . + _:N371ec305967249c3abf25e20c89b744b . + _:N59a54058f03345d7bba7615bae3a8be6 . +_:N371ec305967249c3abf25e20c89b744b "Tsakris,A." . +_:N52ad0ec43a1044a9a9af428e9f889ee5 . +_:N371ec305967249c3abf25e20c89b744b "Gatzidou,E." . +_:N371ec305967249c3abf25e20c89b744b "Department of Medicine" . + -- cgit v1.2.3